lib migration pt4
This commit is contained in:
parent
4d82ea5567
commit
9db0d4aa19
GPG Key ID:
05D5D1107E5100A1
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@ -3,10 +3,25 @@
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@ -25,13 +40,13 @@ checksum = "d301b3b94cb4b2f23d7917810addbbaff90738e0ca2be692bd027e70d7e0330c"
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@ -46,6 +61,21 @@ version = "1.1.0"
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@ -63,9 +93,24 @@ checksum = "cfa8873f51c92e232f9bac4065cddef41b714152812bfc5f7672ba16d6ef8cd9"
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@ -85,9 +130,9 @@ dependencies = [
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@ -97,18 +142,18 @@ dependencies = [
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@ -116,27 +161,27 @@ dependencies = [
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@ -147,18 +192,18 @@ checksum = "3f9eec918d3f24069decb9af1554cad7c880e2da24a9afd88aca000531ab82c1"
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@ -180,44 +225,44 @@ dependencies = [
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[[package]]
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[[package]]
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[[package]]
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@ -417,11 +469,19 @@ checksum = "8a9ee70c43aaf417c914396645a0fa852624801b24ebb7ae78fe8272889ac888"
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@ -432,9 +492,9 @@ checksum = "b9e0384b61958566e926dc50660321d12159025e767c18e043daf26b70104c39"
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|
||||
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|
||||
"indexmap",
|
||||
]
|
||||
|
|
@ -451,15 +511,15 @@ dependencies = [
|
|||
|
||||
[[package]]
|
||||
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|
||||
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|
||||
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|
||||
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||||
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||||
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|
||||
|
||||
[[package]]
|
||||
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||||
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||||
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|
||||
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||||
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||||
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|
||||
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|
||||
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|
||||
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|
||||
|
|
@ -472,72 +532,87 @@ checksum = "e2abad23fbc42b3700f2f279844dc832adb2b2eb069b2df918f455c4e18cc646"
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|||
|
||||
[[package]]
|
||||
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||||
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||||
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||||
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||||
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|
||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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|
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||||
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||||
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||||
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|
||||
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||||
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|
||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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|
||||
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|
||||
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|
||||
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|
||||
|
||||
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|
||||
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|
||||
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|
||||
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||||
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||||
|
||||
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|
||||
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|
||||
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||||
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||||
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||||
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||||
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||||
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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||||
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||||
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||||
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|
||||
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|
||||
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|
||||
|
||||
[[package]]
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
"syn 2.0.48",
|
||||
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|
||||
|
||||
[[package]]
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
|
||||
[[package]]
|
||||
name = "pin-utils"
|
||||
|
|
@ -557,7 +632,21 @@ dependencies = [
|
|||
]
|
||||
|
||||
[[package]]
|
||||
name = "plate-tool"
|
||||
name = "plate-tool-lib"
|
||||
version = "0.1.0"
|
||||
dependencies = [
|
||||
"csv",
|
||||
"getrandom",
|
||||
"log",
|
||||
"rand",
|
||||
"regex",
|
||||
"serde",
|
||||
"serde_json",
|
||||
"uuid",
|
||||
]
|
||||
|
||||
[[package]]
|
||||
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|
||||
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|
||||
dependencies = [
|
||||
"csv",
|
||||
|
|
@ -579,20 +668,6 @@ dependencies = [
|
|||
"yewdux",
|
||||
]
|
||||
|
||||
[[package]]
|
||||
name = "plate-tool-lib"
|
||||
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|
||||
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|
||||
"csv",
|
||||
"getrandom",
|
||||
"log",
|
||||
"rand",
|
||||
"regex",
|
||||
"serde",
|
||||
"serde_json",
|
||||
"uuid",
|
||||
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|
||||
|
||||
[[package]]
|
||||
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|
||||
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|
||||
|
|
@ -635,9 +710,9 @@ dependencies = [
|
|||
|
||||
[[package]]
|
||||
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|
||||
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|
||||
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|
||||
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||||
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||||
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||||
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|
||||
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|
||||
]
|
||||
|
|
@ -661,9 +736,9 @@ dependencies = [
|
|||
|
||||
[[package]]
|
||||
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|
||||
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|
||||
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|
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||||
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|
||||
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|
||||
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|
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|
|
@ -700,9 +775,21 @@ dependencies = [
|
|||
|
||||
[[package]]
|
||||
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|
||||
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||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
|
||||
[[package]]
|
||||
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|
||||
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||||
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||||
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|
||||
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|
||||
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|
||||
|
|
@ -711,21 +798,27 @@ dependencies = [
|
|||
|
||||
[[package]]
|
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|
||||
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||||
|
||||
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||||
|
||||
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|
||||
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||||
|
||||
[[package]]
|
||||
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|
||||
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||||
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|
||||
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|
||||
[[package]]
|
||||
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||||
|
|
@ -735,18 +828,18 @@ checksum = "e1cf6437eb19a8f4a6cc0f7dca544973b0b78843adbfeb3683d1a94a0024a294"
|
|||
|
||||
[[package]]
|
||||
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|
||||
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||||
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|
||||
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|
||||
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|
||||
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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||||
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||||
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|
||||
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|
||||
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|
||||
|
|
@ -755,20 +848,20 @@ dependencies = [
|
|||
|
||||
[[package]]
|
||||
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|
||||
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||||
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||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
|
||||
[[package]]
|
||||
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|
||||
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||||
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||||
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|
||||
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|
||||
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|
||||
|
|
@ -789,9 +882,9 @@ dependencies = [
|
|||
|
||||
[[package]]
|
||||
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|
||||
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|
||||
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||||
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||||
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||||
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|
||||
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|
||||
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|
||||
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|
||||
|
|
@ -815,9 +908,9 @@ dependencies = [
|
|||
|
||||
[[package]]
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
|
|
@ -826,33 +919,32 @@ dependencies = [
|
|||
|
||||
[[package]]
|
||||
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|
||||
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|
||||
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|
||||
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||||
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|
||||
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|
||||
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|
||||
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|
||||
|
||||
[[package]]
|
||||
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|
||||
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|
||||
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||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
|
||||
[[package]]
|
||||
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|
||||
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|
||||
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|
||||
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||||
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||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
]
|
||||
|
||||
[[package]]
|
||||
|
|
@ -868,11 +960,10 @@ dependencies = [
|
|||
|
||||
[[package]]
|
||||
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|
||||
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|
||||
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|
||||
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||
checksum = "8ce8c33a8d48bd45d624a6e523445fd21ec13d3653cd51f681abf67418f54eb8"
|
||||
checksum = "c3523ab5a71916ccf420eebdf5521fcef02141234bbc0b8a49f2fdc4544364ef"
|
||||
dependencies = [
|
||||
"cfg-if",
|
||||
"pin-project-lite",
|
||||
"tracing-attributes",
|
||||
"tracing-core",
|
||||
|
|
@ -880,35 +971,35 @@ dependencies = [
|
|||
|
||||
[[package]]
|
||||
name = "tracing-attributes"
|
||||
version = "0.1.24"
|
||||
version = "0.1.27"
|
||||
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||
checksum = "0f57e3ca2a01450b1a921183a9c9cbfda207fd822cef4ccb00a65402cbba7a74"
|
||||
checksum = "34704c8d6ebcbc939824180af020566b01a7c01f80641264eba0999f6c2b6be7"
|
||||
dependencies = [
|
||||
"proc-macro2",
|
||||
"quote",
|
||||
"syn 2.0.16",
|
||||
"syn 2.0.48",
|
||||
]
|
||||
|
||||
[[package]]
|
||||
name = "tracing-core"
|
||||
version = "0.1.31"
|
||||
version = "0.1.32"
|
||||
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||
checksum = "0955b8137a1df6f1a2e9a37d8a6656291ff0297c1a97c24e0d8425fe2312f79a"
|
||||
checksum = "c06d3da6113f116aaee68e4d601191614c9053067f9ab7f6edbcb161237daa54"
|
||||
dependencies = [
|
||||
"once_cell",
|
||||
]
|
||||
|
||||
[[package]]
|
||||
name = "unicode-ident"
|
||||
version = "1.0.8"
|
||||
version = "1.0.12"
|
||||
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||
checksum = "e5464a87b239f13a63a501f2701565754bae92d243d4bb7eb12f6d57d2269bf4"
|
||||
checksum = "3354b9ac3fae1ff6755cb6db53683adb661634f67557942dea4facebec0fee4b"
|
||||
|
||||
[[package]]
|
||||
name = "uuid"
|
||||
version = "1.6.1"
|
||||
version = "1.7.0"
|
||||
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||
checksum = "5e395fcf16a7a3d8127ec99782007af141946b4795001f876d54fb0d55978560"
|
||||
checksum = "f00cc9702ca12d3c81455259621e676d0f7251cec66a21e98fe2e9a37db93b2a"
|
||||
dependencies = [
|
||||
"atomic",
|
||||
"getrandom",
|
||||
|
|
@ -920,13 +1011,13 @@ dependencies = [
|
|||
|
||||
[[package]]
|
||||
name = "uuid-macro-internal"
|
||||
version = "1.6.1"
|
||||
version = "1.7.0"
|
||||
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||
checksum = "f49e7f3f3db8040a100710a11932239fd30697115e2ba4107080d8252939845e"
|
||||
checksum = "7abb14ae1a50dad63eaa768a458ef43d298cd1bd44951677bd10b732a9ba2a2d"
|
||||
dependencies = [
|
||||
"proc-macro2",
|
||||
"quote",
|
||||
"syn 2.0.16",
|
||||
"syn 2.0.48",
|
||||
]
|
||||
|
||||
[[package]]
|
||||
|
|
@ -943,9 +1034,9 @@ checksum = "9c8d87e72b64a3b4db28d11ce29237c246188f4f51057d65a7eab63b7987e423"
|
|||
|
||||
[[package]]
|
||||
name = "wasm-bindgen"
|
||||
version = "0.2.86"
|
||||
version = "0.2.91"
|
||||
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||
checksum = "5bba0e8cb82ba49ff4e229459ff22a191bbe9a1cb3a341610c9c33efc27ddf73"
|
||||
checksum = "c1e124130aee3fb58c5bdd6b639a0509486b0338acaaae0c84a5124b0f588b7f"
|
||||
dependencies = [
|
||||
"cfg-if",
|
||||
"wasm-bindgen-macro",
|
||||
|
|
@ -953,24 +1044,24 @@ dependencies = [
|
|||
|
||||
[[package]]
|
||||
name = "wasm-bindgen-backend"
|
||||
version = "0.2.86"
|
||||
version = "0.2.91"
|
||||
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||
checksum = "19b04bc93f9d6bdee709f6bd2118f57dd6679cf1176a1af464fca3ab0d66d8fb"
|
||||
checksum = "c9e7e1900c352b609c8488ad12639a311045f40a35491fb69ba8c12f758af70b"
|
||||
dependencies = [
|
||||
"bumpalo",
|
||||
"log",
|
||||
"once_cell",
|
||||
"proc-macro2",
|
||||
"quote",
|
||||
"syn 2.0.16",
|
||||
"syn 2.0.48",
|
||||
"wasm-bindgen-shared",
|
||||
]
|
||||
|
||||
[[package]]
|
||||
name = "wasm-bindgen-futures"
|
||||
version = "0.4.36"
|
||||
version = "0.4.41"
|
||||
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||
checksum = "2d1985d03709c53167ce907ff394f5316aa22cb4e12761295c5dc57dacb6297e"
|
||||
checksum = "877b9c3f61ceea0e56331985743b13f3d25c406a7098d45180fb5f09bc19ed97"
|
||||
dependencies = [
|
||||
"cfg-if",
|
||||
"js-sys",
|
||||
|
|
@ -980,9 +1071,9 @@ dependencies = [
|
|||
|
||||
[[package]]
|
||||
name = "wasm-bindgen-macro"
|
||||
version = "0.2.86"
|
||||
version = "0.2.91"
|
||||
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||
checksum = "14d6b024f1a526bb0234f52840389927257beb670610081360e5a03c5df9c258"
|
||||
checksum = "b30af9e2d358182b5c7449424f017eba305ed32a7010509ede96cdc4696c46ed"
|
||||
dependencies = [
|
||||
"quote",
|
||||
"wasm-bindgen-macro-support",
|
||||
|
|
@ -990,28 +1081,28 @@ dependencies = [
|
|||
|
||||
[[package]]
|
||||
name = "wasm-bindgen-macro-support"
|
||||
version = "0.2.86"
|
||||
version = "0.2.91"
|
||||
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||
checksum = "e128beba882dd1eb6200e1dc92ae6c5dbaa4311aa7bb211ca035779e5efc39f8"
|
||||
checksum = "642f325be6301eb8107a83d12a8ac6c1e1c54345a7ef1a9261962dfefda09e66"
|
||||
dependencies = [
|
||||
"proc-macro2",
|
||||
"quote",
|
||||
"syn 2.0.16",
|
||||
"syn 2.0.48",
|
||||
"wasm-bindgen-backend",
|
||||
"wasm-bindgen-shared",
|
||||
]
|
||||
|
||||
[[package]]
|
||||
name = "wasm-bindgen-shared"
|
||||
version = "0.2.86"
|
||||
version = "0.2.91"
|
||||
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||
checksum = "ed9d5b4305409d1fc9482fee2d7f9bcbf24b3972bf59817ef757e23982242a93"
|
||||
checksum = "4f186bd2dcf04330886ce82d6f33dd75a7bfcf69ecf5763b89fcde53b6ac9838"
|
||||
|
||||
[[package]]
|
||||
name = "wasm-bindgen-test"
|
||||
version = "0.3.36"
|
||||
version = "0.3.41"
|
||||
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||
checksum = "c9e636f3a428ff62b3742ebc3c70e254dfe12b8c2b469d688ea59cdd4abcf502"
|
||||
checksum = "143ddeb4f833e2ed0d252e618986e18bfc7b0e52f2d28d77d05b2f045dd8eb61"
|
||||
dependencies = [
|
||||
"console_error_panic_hook",
|
||||
"js-sys",
|
||||
|
|
@ -1023,12 +1114,13 @@ dependencies = [
|
|||
|
||||
[[package]]
|
||||
name = "wasm-bindgen-test-macro"
|
||||
version = "0.3.36"
|
||||
version = "0.3.41"
|
||||
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||
checksum = "f18c1fad2f7c4958e7bcce014fa212f59a65d5e3721d0f77e6c0b27ede936ba3"
|
||||
checksum = "a5211b7550606857312bba1d978a8ec75692eae187becc5e680444fffc5e6f89"
|
||||
dependencies = [
|
||||
"proc-macro2",
|
||||
"quote",
|
||||
"syn 2.0.48",
|
||||
]
|
||||
|
||||
[[package]]
|
||||
|
|
@ -1044,80 +1136,14 @@ dependencies = [
|
|||
|
||||
[[package]]
|
||||
name = "web-sys"
|
||||
version = "0.3.63"
|
||||
version = "0.3.68"
|
||||
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||
checksum = "3bdd9ef4e984da1187bf8110c5cf5b845fbc87a23602cdf912386a76fcd3a7c2"
|
||||
checksum = "96565907687f7aceb35bc5fc03770a8a0471d82e479f25832f54a0e3f4b28446"
|
||||
dependencies = [
|
||||
"js-sys",
|
||||
"wasm-bindgen",
|
||||
]
|
||||
|
||||
[[package]]
|
||||
name = "windows-sys"
|
||||
version = "0.48.0"
|
||||
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||
checksum = "677d2418bec65e3338edb076e806bc1ec15693c5d0104683f2efe857f61056a9"
|
||||
dependencies = [
|
||||
"windows-targets",
|
||||
]
|
||||
|
||||
[[package]]
|
||||
name = "windows-targets"
|
||||
version = "0.48.0"
|
||||
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||
checksum = "7b1eb6f0cd7c80c79759c929114ef071b87354ce476d9d94271031c0497adfd5"
|
||||
dependencies = [
|
||||
"windows_aarch64_gnullvm",
|
||||
"windows_aarch64_msvc",
|
||||
"windows_i686_gnu",
|
||||
"windows_i686_msvc",
|
||||
"windows_x86_64_gnu",
|
||||
"windows_x86_64_gnullvm",
|
||||
"windows_x86_64_msvc",
|
||||
]
|
||||
|
||||
[[package]]
|
||||
name = "windows_aarch64_gnullvm"
|
||||
version = "0.48.0"
|
||||
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||
checksum = "91ae572e1b79dba883e0d315474df7305d12f569b400fcf90581b06062f7e1bc"
|
||||
|
||||
[[package]]
|
||||
name = "windows_aarch64_msvc"
|
||||
version = "0.48.0"
|
||||
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||
checksum = "b2ef27e0d7bdfcfc7b868b317c1d32c641a6fe4629c171b8928c7b08d98d7cf3"
|
||||
|
||||
[[package]]
|
||||
name = "windows_i686_gnu"
|
||||
version = "0.48.0"
|
||||
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||
checksum = "622a1962a7db830d6fd0a69683c80a18fda201879f0f447f065a3b7467daa241"
|
||||
|
||||
[[package]]
|
||||
name = "windows_i686_msvc"
|
||||
version = "0.48.0"
|
||||
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||
checksum = "4542c6e364ce21bf45d69fdd2a8e455fa38d316158cfd43b3ac1c5b1b19f8e00"
|
||||
|
||||
[[package]]
|
||||
name = "windows_x86_64_gnu"
|
||||
version = "0.48.0"
|
||||
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||
checksum = "ca2b8a661f7628cbd23440e50b05d705db3686f894fc9580820623656af974b1"
|
||||
|
||||
[[package]]
|
||||
name = "windows_x86_64_gnullvm"
|
||||
version = "0.48.0"
|
||||
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||
checksum = "7896dbc1f41e08872e9d5e8f8baa8fdd2677f29468c4e156210174edc7f7b953"
|
||||
|
||||
[[package]]
|
||||
name = "windows_x86_64_msvc"
|
||||
version = "0.48.0"
|
||||
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||
checksum = "1a515f5799fe4961cb532f983ce2b23082366b898e52ffbce459c86f67c8378a"
|
||||
|
||||
[[package]]
|
||||
name = "yew"
|
||||
version = "0.20.0"
|
||||
|
|
@ -1160,9 +1186,9 @@ dependencies = [
|
|||
|
||||
[[package]]
|
||||
name = "yewdux"
|
||||
version = "0.9.2"
|
||||
version = "0.9.3"
|
||||
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||
checksum = "653ba356bc60d1804c28ec6cc8ddac2741c686bde2a65074d07faba735914464"
|
||||
checksum = "3c528544a814a0beb30059c8340eb78c88160141db788112b51a5a08098cef2d"
|
||||
dependencies = [
|
||||
"anymap",
|
||||
"async-trait",
|
||||
|
|
@ -1179,13 +1205,13 @@ dependencies = [
|
|||
|
||||
[[package]]
|
||||
name = "yewdux-macros"
|
||||
version = "0.9.2"
|
||||
version = "0.9.4"
|
||||
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||
checksum = "25bcd923aceaa85cb4affad8657cc36e3d6b6932740e711574182f7817492739"
|
||||
checksum = "d22b1832d3e3eaa61a5c2ecd40affa876507457180d1e599143368c1c3317c2d"
|
||||
dependencies = [
|
||||
"darling",
|
||||
"proc-macro-error",
|
||||
"proc-macro2",
|
||||
"quote",
|
||||
"syn 1.0.109",
|
||||
"syn 2.0.48",
|
||||
]
|
||||
|
|
|
|||
33
Cargo.toml
33
Cargo.toml
|
|
@ -1,30 +1,3 @@
|
|||
[package]
|
||||
name = "plate-tool"
|
||||
version = "0.2.0"
|
||||
edition = "2021"
|
||||
|
||||
# See more keys and their definitions at https://doc.rust-lang.org/cargo/reference/manifest.html
|
||||
|
||||
[dependencies]
|
||||
plate-tool-lib = { path = "lib" }
|
||||
yew = { version = "0.20.0", features = ["csr"] }
|
||||
yewdux = "0.9"
|
||||
wasm-bindgen = "0.2"
|
||||
web-sys = { version = "0.3", features = ["FormData", "HtmlFormElement",
|
||||
"HtmlDialogElement", "Blob", "Url", "Window",
|
||||
"HtmlAnchorElement", "ReadableStream", "HtmlSelectElement", "HtmlOptionElement", "HtmlButtonElement",
|
||||
"FileReader"] }
|
||||
js-sys = "0.3"
|
||||
log = "0.4"
|
||||
wasm-logger = "0.2"
|
||||
regex = "1"
|
||||
lazy_static = "1.4"
|
||||
uuid = { version = "1.6", features = ["v7", "fast-rng", "macro-diagnostics", "js", "serde"] }
|
||||
serde = { version = "1.0", features = ["derive"] }
|
||||
serde_json = "1.0"
|
||||
csv = "1.2"
|
||||
getrandom = { version = "0.2", features = ["js"] }
|
||||
rand = { version = "0.8", features = ["small_rng"] }
|
||||
|
||||
[dev-dependencies]
|
||||
wasm-bindgen-test = "0.3.0"
|
||||
[workspace]
|
||||
members = ["plate-tool-web", "plate-tool-lib"]
|
||||
resolver = "2"
|
||||
|
|
|
|||
|
|
@ -1,62 +0,0 @@
|
|||
// use crate::components::states::MainState;
|
||||
use crate::transfer::Transfer;
|
||||
use crate::util::*;
|
||||
|
||||
use serde::{Serialize, Deserialize};
|
||||
use std::error::Error;
|
||||
|
||||
#[derive(Serialize, Deserialize, Debug)]
|
||||
pub struct TransferRecord {
|
||||
#[serde(rename = "Source Plate", alias = "source plate", alias = "src plate")]
|
||||
pub source_plate: String,
|
||||
#[serde(rename = "Source Well", alias = "source well", alias = "src well")]
|
||||
pub source_well: String,
|
||||
#[serde(rename = "Dest Plate", alias = "dest plate", alias = "destination plate")]
|
||||
pub destination_plate: String,
|
||||
#[serde(rename = "Destination Well", alias = "destination well", alias = "dest well")]
|
||||
pub destination_well: String,
|
||||
#[serde(rename = "Transfer Volume", alias = "transfer volume")]
|
||||
pub volume: f32,
|
||||
#[serde(rename = "Concentration", alias = "concentration")]
|
||||
pub concentration: Option<f32>,
|
||||
}
|
||||
|
||||
/*
|
||||
*/
|
||||
|
||||
pub fn transfer_to_records(
|
||||
tr: &Transfer,
|
||||
src_barcode: &str,
|
||||
dest_barcode: &str,
|
||||
) -> Vec<TransferRecord> {
|
||||
let source_wells = tr.transfer_region.get_source_wells();
|
||||
let map = tr.transfer_region.calculate_map();
|
||||
|
||||
let mut records: Vec<TransferRecord> = vec![];
|
||||
|
||||
for s_well in source_wells {
|
||||
let dest_wells = map(s_well);
|
||||
if let Some(dest_wells) = dest_wells {
|
||||
for d_well in dest_wells {
|
||||
records.push(TransferRecord {
|
||||
source_plate: src_barcode.to_string(),
|
||||
source_well: format!("{}{}", num_to_letters(s_well.0).unwrap(), s_well.1),
|
||||
destination_plate: dest_barcode.to_string(),
|
||||
destination_well: format!("{}{}", num_to_letters(d_well.0).unwrap(), d_well.1),
|
||||
volume: tr.volume,
|
||||
concentration: None,
|
||||
})
|
||||
}
|
||||
}
|
||||
}
|
||||
records
|
||||
}
|
||||
|
||||
pub fn records_to_csv(trs: Vec<TransferRecord>) -> Result<String, Box<dyn Error>> {
|
||||
let mut wtr = csv::WriterBuilder::new().from_writer(vec![]);
|
||||
for record in trs {
|
||||
wtr.serialize(record)?
|
||||
}
|
||||
let data = String::from_utf8(wtr.into_inner()?)?;
|
||||
Ok(data)
|
||||
}
|
||||
|
|
@ -1,6 +0,0 @@
|
|||
pub mod csv;
|
||||
pub mod plate;
|
||||
pub mod plate_instances;
|
||||
pub mod transfer;
|
||||
pub mod transfer_region;
|
||||
pub mod util;
|
||||
|
|
@ -1,77 +0,0 @@
|
|||
use serde::{Deserialize, Serialize};
|
||||
|
||||
#[derive(PartialEq, Eq, Default, Clone, Copy, Serialize, Deserialize, Debug)]
|
||||
pub struct Plate {
|
||||
pub plate_type: PlateType,
|
||||
pub plate_format: PlateFormat,
|
||||
}
|
||||
|
||||
impl Plate {
|
||||
pub fn new(plate_type: PlateType, plate_format: PlateFormat) -> Self {
|
||||
Plate {
|
||||
plate_type,
|
||||
plate_format,
|
||||
}
|
||||
}
|
||||
|
||||
pub fn size(&self) -> (u8, u8) {
|
||||
self.plate_format.size()
|
||||
}
|
||||
}
|
||||
|
||||
#[derive(PartialEq, Eq, Clone, Copy, Serialize, Deserialize, Debug)]
|
||||
pub enum PlateType {
|
||||
Source,
|
||||
Destination,
|
||||
}
|
||||
impl Default for PlateType {
|
||||
fn default() -> Self {
|
||||
Self::Source
|
||||
}
|
||||
}
|
||||
|
||||
#[derive(PartialEq, Eq, Clone, Copy, Serialize, Deserialize, Debug)]
|
||||
pub enum PlateFormat {
|
||||
W6,
|
||||
W12,
|
||||
W24,
|
||||
W48,
|
||||
W96,
|
||||
W384,
|
||||
W1536,
|
||||
W3456,
|
||||
}
|
||||
impl Default for PlateFormat {
|
||||
fn default() -> Self {
|
||||
Self::W96
|
||||
}
|
||||
}
|
||||
impl std::fmt::Display for PlateFormat {
|
||||
fn fmt(&self, f: &mut std::fmt::Formatter<'_>) -> std::fmt::Result {
|
||||
match self {
|
||||
PlateFormat::W6 => write!(f, "6"),
|
||||
PlateFormat::W12 => write!(f, "12"),
|
||||
PlateFormat::W24 => write!(f, "24"),
|
||||
PlateFormat::W48 => write!(f, "48"),
|
||||
PlateFormat::W96 => write!(f, "96"),
|
||||
PlateFormat::W384 => write!(f, "384"),
|
||||
PlateFormat::W1536 => write!(f, "1536"),
|
||||
PlateFormat::W3456 => write!(f, "3456"),
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
impl PlateFormat {
|
||||
pub fn size(&self) -> (u8, u8) {
|
||||
match self {
|
||||
PlateFormat::W6 => (2, 3),
|
||||
PlateFormat::W12 => (3, 4),
|
||||
PlateFormat::W24 => (4, 6),
|
||||
PlateFormat::W48 => (6, 8),
|
||||
PlateFormat::W96 => (8, 12),
|
||||
PlateFormat::W384 => (16, 24),
|
||||
PlateFormat::W1536 => (32, 48),
|
||||
PlateFormat::W3456 => (48, 72),
|
||||
}
|
||||
}
|
||||
}
|
||||
|
|
@ -1,50 +0,0 @@
|
|||
use super::plate::*;
|
||||
use serde::{Deserialize, Serialize};
|
||||
use uuid::Uuid;
|
||||
|
||||
#[derive(PartialEq, Clone, Serialize, Deserialize)]
|
||||
pub struct PlateInstance {
|
||||
pub plate: Plate,
|
||||
#[serde(rename = "id_v7")]
|
||||
#[serde(default = "Uuid::now_v7")]
|
||||
id: Uuid,
|
||||
pub name: String,
|
||||
}
|
||||
|
||||
impl PlateInstance {
|
||||
pub fn new(sort: PlateType, format: PlateFormat, name: String) -> Self {
|
||||
PlateInstance {
|
||||
plate: Plate {
|
||||
plate_type: sort,
|
||||
plate_format: format,
|
||||
},
|
||||
id: Uuid::now_v7(),
|
||||
name,
|
||||
}
|
||||
}
|
||||
|
||||
pub fn get_uuid(&self) -> Uuid {
|
||||
self.id
|
||||
}
|
||||
|
||||
pub fn change_name(&mut self, new_name: String) {
|
||||
self.name = new_name;
|
||||
}
|
||||
}
|
||||
|
||||
impl From<Plate> for PlateInstance {
|
||||
fn from(value: Plate) -> Self {
|
||||
PlateInstance {
|
||||
plate: value,
|
||||
id: Uuid::now_v7(),
|
||||
name: "New Plate".to_string(),
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
impl From<&PlateInstance> for String {
|
||||
fn from(value: &PlateInstance) -> Self {
|
||||
// Could have other formatting here
|
||||
format!("{}, {}", value.name, value.plate.plate_format)
|
||||
}
|
||||
}
|
||||
|
|
@ -1,58 +0,0 @@
|
|||
use super::plate_instances::*;
|
||||
use super::transfer_region::*;
|
||||
use serde::Deserialize;
|
||||
use serde::Serialize;
|
||||
use uuid::Uuid;
|
||||
|
||||
#[derive(PartialEq, Clone, Debug, Serialize, Deserialize)]
|
||||
#[non_exhaustive]
|
||||
pub struct Transfer {
|
||||
pub source_id: Uuid,
|
||||
pub dest_id: Uuid,
|
||||
pub name: String,
|
||||
#[serde(rename = "id_v7")]
|
||||
#[serde(default = "Uuid::now_v7")]
|
||||
pub id: Uuid,
|
||||
pub transfer_region: TransferRegion,
|
||||
#[serde(default = "default_volume")]
|
||||
pub volume: f32,
|
||||
}
|
||||
|
||||
impl Default for Transfer {
|
||||
fn default() -> Self {
|
||||
Transfer {
|
||||
source_id: Default::default(),
|
||||
dest_id: Default::default(),
|
||||
name: "New Transfer".to_string(),
|
||||
id: Default::default(),
|
||||
transfer_region: Default::default(),
|
||||
volume: 2.5f32,
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
fn default_volume() -> f32 {
|
||||
2.5f32
|
||||
}
|
||||
|
||||
impl Transfer {
|
||||
pub fn new(
|
||||
source: PlateInstance,
|
||||
dest: PlateInstance,
|
||||
tr: TransferRegion,
|
||||
name: String,
|
||||
) -> Self {
|
||||
Self {
|
||||
source_id: source.get_uuid(),
|
||||
dest_id: dest.get_uuid(),
|
||||
name,
|
||||
id: Uuid::now_v7(),
|
||||
transfer_region: tr,
|
||||
volume: 2.5,
|
||||
}
|
||||
}
|
||||
|
||||
pub fn get_uuid(&self) -> Uuid {
|
||||
self.id
|
||||
}
|
||||
}
|
||||
|
|
@ -1,591 +0,0 @@
|
|||
use serde::{Deserialize, Serialize};
|
||||
|
||||
use super::plate::Plate;
|
||||
|
||||
#[derive(Clone, PartialEq, Eq, Serialize, Deserialize, Debug)]
|
||||
pub struct CustomRegion {
|
||||
src: Vec<(u8, u8)>,
|
||||
dest: Vec<(u8, u8)>,
|
||||
}
|
||||
|
||||
#[derive(Clone, PartialEq, Eq, Serialize, Deserialize, Debug)]
|
||||
pub enum Region {
|
||||
Rect((u8, u8), (u8, u8)),
|
||||
Point((u8, u8)),
|
||||
Custom(CustomRegion),
|
||||
}
|
||||
impl Default for Region {
|
||||
fn default() -> Self {
|
||||
Region::Point((1, 1))
|
||||
}
|
||||
}
|
||||
impl TryFrom<Region> for ((u8, u8), (u8, u8)) {
|
||||
type Error = &'static str;
|
||||
fn try_from(region: Region) -> Result<Self, Self::Error> {
|
||||
if let Region::Rect(c1, c2) = region {
|
||||
Ok((c1, c2))
|
||||
} else {
|
||||
// Should consider returning a degenerate rectangle here instead
|
||||
Err("Cannot convert this region to a rectangle, it was a point.")
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
type Corner = (u8, u8);
|
||||
type Rectangle = (Corner, Corner);
|
||||
impl Region {
|
||||
pub fn new_custom(transfers: &Vec<Rectangle>) -> Self {
|
||||
let mut src_pts: Vec<(u8, u8)> = Vec::with_capacity(transfers.len());
|
||||
let mut dest_pts: Vec<(u8, u8)> = Vec::with_capacity(transfers.len());
|
||||
|
||||
for transfer in transfers {
|
||||
src_pts.push(transfer.0);
|
||||
dest_pts.push(transfer.1);
|
||||
}
|
||||
|
||||
Region::Custom(CustomRegion {
|
||||
src: src_pts,
|
||||
dest: dest_pts,
|
||||
})
|
||||
}
|
||||
}
|
||||
|
||||
#[derive(PartialEq, Eq, Clone, Serialize, Deserialize, Debug)]
|
||||
pub struct TransferRegion {
|
||||
pub source_plate: Plate,
|
||||
pub source_region: Region, // Even if it is just a point, we don't want corners.
|
||||
pub dest_plate: Plate,
|
||||
pub dest_region: Region,
|
||||
pub interleave_source: (i8, i8),
|
||||
pub interleave_dest: (i8, i8),
|
||||
}
|
||||
|
||||
impl Default for TransferRegion {
|
||||
fn default() -> Self {
|
||||
TransferRegion {
|
||||
source_plate: Plate::default(),
|
||||
source_region: Region::default(),
|
||||
dest_plate: Plate::default(),
|
||||
dest_region: Region::default(),
|
||||
interleave_source: (1, 1),
|
||||
interleave_dest: (1, 1),
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
impl TransferRegion {
|
||||
pub fn get_source_wells(&self) -> Vec<(u8, u8)> {
|
||||
match &self.source_region {
|
||||
Region::Rect(c1, c2) => {
|
||||
let mut wells = Vec::<(u8, u8)>::new();
|
||||
let (ul, br) = standardize_rectangle(c1, c2);
|
||||
let (interleave_i, interleave_j) = self.interleave_source;
|
||||
// NOTE: This will panic if either is 0!
|
||||
// We'll reassign these values (still not mutable) just in case.
|
||||
// This behaviour shouldn't be replicated for destination wells
|
||||
// because a zero step permits pooling.
|
||||
let (interleave_i, interleave_j) =
|
||||
(i8::max(interleave_i, 1), i8::max(interleave_j, 1));
|
||||
|
||||
for i in (ul.0..=br.0).step_by(i8::abs(interleave_i) as usize) {
|
||||
for j in (ul.1..=br.1).step_by(i8::abs(interleave_j) as usize) {
|
||||
// NOTE: It looks like we're ignoring negative interleaves,
|
||||
// because it wouldn't make a difference here---the same
|
||||
// wells will still be involved in the transfer.
|
||||
wells.push((i, j))
|
||||
}
|
||||
}
|
||||
wells
|
||||
}
|
||||
Region::Point(p) => vec![*p],
|
||||
Region::Custom(c) => c.src.clone(),
|
||||
}
|
||||
}
|
||||
|
||||
pub fn get_destination_wells(&self) -> Vec<(u8, u8)> {
|
||||
let map = self.calculate_map();
|
||||
let source_wells = self.get_source_wells();
|
||||
|
||||
let mut wells = Vec::<(u8, u8)>::new();
|
||||
|
||||
// log::debug!("GDW:");
|
||||
for well in source_wells {
|
||||
if let Some(mut dest_wells) = map(well) {
|
||||
// log::debug!("Map {:?} to {:?}", well, dest_wells);
|
||||
wells.append(&mut dest_wells);
|
||||
}
|
||||
}
|
||||
// log::debug!("GDW END.");
|
||||
|
||||
wells
|
||||
}
|
||||
|
||||
#[allow(clippy::type_complexity)] // Resolving gives inherent associated type error
|
||||
pub fn calculate_map(&self) -> Box<dyn Fn((u8, u8)) -> Option<Vec<(u8, u8)>> + '_> {
|
||||
// By validating first, we have a stronger guarantee that
|
||||
// this function will not panic. :)
|
||||
// log::debug!("Validating: {:?}", self.validate());
|
||||
if let Err(msg) = self.validate() {
|
||||
eprintln!("{}", msg);
|
||||
eprintln!("This transfer will be empty.");
|
||||
return Box::new(|(_, _)| None);
|
||||
}
|
||||
|
||||
// log::debug!("What is ild? {:?}", self);
|
||||
let source_wells = self.get_source_wells();
|
||||
let il_dest = self.interleave_dest;
|
||||
let il_source = self.interleave_source;
|
||||
|
||||
let source_corners: ((u8, u8), (u8, u8)) = match self.source_region {
|
||||
Region::Point((x, y)) => ((x, y), (x, y)),
|
||||
Region::Rect(c1, c2) => (c1, c2),
|
||||
Region::Custom(_) => ((0, 0), (0, 0)),
|
||||
};
|
||||
let (source_ul, _) = standardize_rectangle(&source_corners.0, &source_corners.1);
|
||||
// This map is not necessarily injective or surjective,
|
||||
// but we will have these properties in certain cases.
|
||||
// If the transfer is not a pooling transfer (interleave == 0)
|
||||
// and simple then we *will* have injectivity.
|
||||
|
||||
// Non-replicate transfers:
|
||||
match &self.dest_region {
|
||||
Region::Point((x, y)) => {
|
||||
Box::new(move |(i, j)| {
|
||||
if source_wells.contains(&(i, j)) {
|
||||
// Validity here already checked by self.validate()
|
||||
Some(vec![(
|
||||
x + i
|
||||
.checked_sub(source_ul.0)
|
||||
.expect("Point cannot have been less than UL")
|
||||
.checked_div(il_source.0.unsigned_abs())
|
||||
.expect("Source interleave cannot be 0")
|
||||
.mul(il_dest.0.unsigned_abs()),
|
||||
y + j
|
||||
.checked_sub(source_ul.1)
|
||||
.expect("Point cannot have been less than UL")
|
||||
.checked_div(il_source.1.unsigned_abs())
|
||||
.expect("Source interleave cannot be 0")
|
||||
.mul(il_dest.1.unsigned_abs()),
|
||||
)])
|
||||
} else {
|
||||
None
|
||||
}
|
||||
})
|
||||
}
|
||||
Region::Rect(c1, c2) => {
|
||||
Box::new(move |(i, j)| {
|
||||
if source_wells.contains(&(i, j)) {
|
||||
let possible_destination_wells = create_dense_rectangle(c1, c2);
|
||||
let (d_ul, d_br) = standardize_rectangle(c1, c2);
|
||||
let (s_ul, s_br) =
|
||||
standardize_rectangle(&source_corners.0, &source_corners.1);
|
||||
let s_dims = (
|
||||
s_br.0.checked_sub(s_ul.0).unwrap() + 1,
|
||||
s_br.1.checked_sub(s_ul.1).unwrap() + 1,
|
||||
);
|
||||
let d_dims = (
|
||||
d_br.0.checked_sub(d_ul.0).unwrap() + 1,
|
||||
d_br.1.checked_sub(d_ul.1).unwrap() + 1,
|
||||
);
|
||||
let N_s = (
|
||||
// Number of used source wells
|
||||
(s_dims.0 + il_source.0.unsigned_abs() - 1)
|
||||
.div_euclid(il_source.0.unsigned_abs()),
|
||||
(s_dims.1 + il_source.1.unsigned_abs() - 1)
|
||||
.div_euclid(il_source.1.unsigned_abs()),
|
||||
);
|
||||
let count = (
|
||||
// How many times can we replicate?
|
||||
(1..)
|
||||
.position(|n| {
|
||||
n * N_s.0 * il_dest.0.unsigned_abs() - il_dest.0.unsigned_abs()
|
||||
+ 1
|
||||
> d_dims.0
|
||||
})
|
||||
.unwrap() as u8,
|
||||
(1..)
|
||||
.position(|n| {
|
||||
n * N_s.1 * il_dest.1.unsigned_abs() - il_dest.1.unsigned_abs()
|
||||
+ 1
|
||||
> d_dims.1
|
||||
})
|
||||
.unwrap() as u8,
|
||||
);
|
||||
let i = i
|
||||
.saturating_sub(s_ul.0)
|
||||
.saturating_div(il_source.0.unsigned_abs());
|
||||
let j = j
|
||||
.saturating_sub(s_ul.1)
|
||||
.saturating_div(il_source.1.unsigned_abs());
|
||||
|
||||
Some(
|
||||
possible_destination_wells
|
||||
.into_iter()
|
||||
.filter(|(x, _)| {
|
||||
x.checked_sub(d_ul.0).unwrap()
|
||||
% (N_s.0 * il_dest.0.unsigned_abs()) // Counter along x
|
||||
== (il_dest.0.unsigned_abs() *i)
|
||||
% (N_s.0 * il_dest.0.unsigned_abs())
|
||||
})
|
||||
.filter(|(_, y)| {
|
||||
y.checked_sub(d_ul.1).unwrap()
|
||||
% (N_s.1 * il_dest.1.unsigned_abs()) // Counter along u
|
||||
== (il_dest.1.unsigned_abs() *j)
|
||||
% (N_s.1 * il_dest.1.unsigned_abs())
|
||||
})
|
||||
.filter(|(x, y)| {
|
||||
// How many times have we replicated? < How many are we allowed
|
||||
// to replicate?
|
||||
x.checked_sub(d_ul.0)
|
||||
.unwrap()
|
||||
.div_euclid(N_s.0 * il_dest.0.unsigned_abs())
|
||||
< count.0
|
||||
&& y.checked_sub(d_ul.1)
|
||||
.unwrap()
|
||||
.div_euclid(N_s.1 * il_dest.1.unsigned_abs())
|
||||
< count.1
|
||||
})
|
||||
.collect(),
|
||||
)
|
||||
} else {
|
||||
None
|
||||
}
|
||||
})
|
||||
}
|
||||
Region::Custom(c) => Box::new(move |(i, j)| {
|
||||
let src = c.src.clone();
|
||||
let dest = c.dest.clone();
|
||||
|
||||
let points: Vec<(u8, u8)> = src
|
||||
.iter()
|
||||
.enumerate()
|
||||
.filter(|(_index, (x, y))| *x == i && *y == j)
|
||||
.map(|(index, _)| dest[index])
|
||||
.collect();
|
||||
if points.is_empty() {
|
||||
None
|
||||
} else {
|
||||
Some(points)
|
||||
}
|
||||
}),
|
||||
}
|
||||
}
|
||||
|
||||
pub fn validate(&self) -> Result<(), &'static str> {
|
||||
// Checks if the region does anything suspect
|
||||
//
|
||||
// If validation fails, we pass a string to show to the user.
|
||||
//
|
||||
// We check:
|
||||
// - Are the wells in the source really there?
|
||||
// - In a replication region, do the source lengths divide the destination lengths?
|
||||
// - Are the interleaves valid?
|
||||
let il_source = self.interleave_source;
|
||||
let il_dest = self.interleave_dest;
|
||||
|
||||
match self.source_region {
|
||||
Region::Point(_) => return Ok(()), // Should make sure it's actually in the plate, leave for
|
||||
// later
|
||||
Region::Rect(s1, s2) => {
|
||||
// Check if all source wells exist:
|
||||
if s1.0 == 0 || s1.1 == 0 || s2.0 == 0 || s2.1 == 0 {
|
||||
return Err("Source region is out-of-bounds! (Too small)");
|
||||
}
|
||||
// Sufficient to check if the corners are in-bounds
|
||||
let source_max = self.source_plate.size();
|
||||
if s1.0 > source_max.0 || s2.0 > source_max.0 {
|
||||
return Err("Source region is out-of-bounds! (Too tall)");
|
||||
}
|
||||
if s1.1 > source_max.1 || s2.1 > source_max.1 {
|
||||
// log::debug!("s1.1: {}, max.1: {}", s1.1, source_max.1);
|
||||
return Err("Source region is out-of-bounds! (Too wide)");
|
||||
}
|
||||
}
|
||||
Region::Custom(_) => return Ok(()),
|
||||
}
|
||||
|
||||
if il_source.0 == 0 || il_dest.1 == 0 {
|
||||
return Err("Source interleave cannot be zero!");
|
||||
}
|
||||
|
||||
// Check if all destination wells exist:
|
||||
// NOT IMPLEMENTED
|
||||
// Should *not* happen in this function---otherwise
|
||||
// we'd get a nasty recursive loop.
|
||||
|
||||
Ok(())
|
||||
}
|
||||
}
|
||||
|
||||
fn create_dense_rectangle(c1: &(u8, u8), c2: &(u8, u8)) -> Vec<(u8, u8)> {
|
||||
// Creates a vector of every point between two corners
|
||||
let (c1, c2) = standardize_rectangle(c1, c2);
|
||||
|
||||
let mut points = Vec::<(u8, u8)>::new();
|
||||
for i in c1.0..=c2.0 {
|
||||
for j in c1.1..=c2.1 {
|
||||
points.push((i, j));
|
||||
}
|
||||
}
|
||||
|
||||
points
|
||||
}
|
||||
|
||||
fn standardize_rectangle(c1: &(u8, u8), c2: &(u8, u8)) -> ((u8, u8), (u8, u8)) {
|
||||
let upper_left_i = u8::min(c1.0, c2.0);
|
||||
let upper_left_j = u8::min(c1.1, c2.1);
|
||||
let bottom_right_i = u8::max(c1.0, c2.0);
|
||||
let bottom_right_j = u8::max(c1.1, c2.1);
|
||||
(
|
||||
(upper_left_i, upper_left_j),
|
||||
(bottom_right_i, bottom_right_j),
|
||||
)
|
||||
}
|
||||
|
||||
#[cfg(debug_assertions)]
|
||||
use std::fmt;
|
||||
use std::ops::Mul;
|
||||
|
||||
#[cfg(debug_assertions)] // There should be no reason to print a transfer otherwise
|
||||
impl fmt::Display for TransferRegion {
|
||||
fn fmt(&self, f: &mut fmt::Formatter<'_>) -> fmt::Result {
|
||||
writeln!(f, "Source Plate:")?;
|
||||
let source_dims = self.source_plate.size();
|
||||
let source_wells = self.get_source_wells();
|
||||
let mut source_string = String::new();
|
||||
for i in 1..=source_dims.0 {
|
||||
for j in 1..=source_dims.1 {
|
||||
if source_wells.contains(&(i, j)) {
|
||||
source_string.push('x')
|
||||
} else {
|
||||
source_string.push('.')
|
||||
}
|
||||
}
|
||||
source_string.push('\n');
|
||||
}
|
||||
write!(f, "{}", source_string)?;
|
||||
|
||||
writeln!(f, "Dest Plate:")?;
|
||||
let dest_dims = self.dest_plate.size();
|
||||
let dest_wells = self.get_destination_wells();
|
||||
let mut dest_string = String::new();
|
||||
for i in 1..=dest_dims.0 {
|
||||
for j in 1..=dest_dims.1 {
|
||||
if dest_wells.contains(&(i, j)) {
|
||||
dest_string.push('x')
|
||||
} else {
|
||||
dest_string.push('.')
|
||||
}
|
||||
}
|
||||
dest_string.push('\n');
|
||||
}
|
||||
write!(f, "{}", dest_string)
|
||||
}
|
||||
}
|
||||
|
||||
#[cfg(test)]
|
||||
mod tests {
|
||||
use wasm_bindgen_test::*;
|
||||
|
||||
use crate::data::plate::*;
|
||||
use crate::data::transfer_region::*;
|
||||
|
||||
#[test]
|
||||
#[wasm_bindgen_test]
|
||||
fn test_simple_transfer() {
|
||||
let source = Plate::new(PlateType::Source, PlateFormat::W96);
|
||||
let destination = Plate::new(PlateType::Destination, PlateFormat::W384);
|
||||
|
||||
let transfer1 = TransferRegion {
|
||||
source_plate: source,
|
||||
source_region: Region::Rect((1, 1), (3, 3)),
|
||||
dest_plate: destination,
|
||||
dest_region: Region::Point((3, 3)),
|
||||
interleave_source: (1, 1),
|
||||
interleave_dest: (1, 1),
|
||||
};
|
||||
let transfer1_map = transfer1.calculate_map();
|
||||
assert_eq!(
|
||||
transfer1_map((1, 1)),
|
||||
Some(vec! {(3,3)}),
|
||||
"Failed basic shift transfer 1"
|
||||
);
|
||||
assert_eq!(
|
||||
transfer1_map((1, 2)),
|
||||
Some(vec! {(3,4)}),
|
||||
"Failed basic shift transfer 2"
|
||||
);
|
||||
assert_eq!(
|
||||
transfer1_map((2, 2)),
|
||||
Some(vec! {(4,4)}),
|
||||
"Failed basic shift transfer 3"
|
||||
);
|
||||
|
||||
let transfer2 = TransferRegion {
|
||||
source_plate: source,
|
||||
source_region: Region::Rect((1, 1), (3, 3)),
|
||||
dest_plate: destination,
|
||||
dest_region: Region::Point((3, 3)),
|
||||
interleave_source: (2, 2),
|
||||
interleave_dest: (1, 1),
|
||||
};
|
||||
let transfer2_map = transfer2.calculate_map();
|
||||
assert_eq!(
|
||||
transfer2_map((1, 1)),
|
||||
Some(vec! {(3,3)}),
|
||||
"Failed source interleave, type simple 1"
|
||||
);
|
||||
assert_eq!(
|
||||
transfer2_map((1, 2)),
|
||||
None,
|
||||
"Failed source interleave, type simple 2"
|
||||
);
|
||||
assert_eq!(
|
||||
transfer2_map((2, 2)),
|
||||
None,
|
||||
"Failed source interleave, type simple 3"
|
||||
);
|
||||
assert_eq!(
|
||||
transfer2_map((3, 3)),
|
||||
Some(vec! {(4,4)}),
|
||||
"Failed source interleave, type simple 4"
|
||||
);
|
||||
|
||||
let transfer3 = TransferRegion {
|
||||
source_plate: source,
|
||||
source_region: Region::Rect((1, 1), (3, 3)),
|
||||
dest_plate: destination,
|
||||
dest_region: Region::Point((3, 3)),
|
||||
interleave_source: (1, 1),
|
||||
interleave_dest: (2, 3),
|
||||
};
|
||||
let transfer3_map = transfer3.calculate_map();
|
||||
assert_eq!(
|
||||
transfer3_map((1, 1)),
|
||||
Some(vec! {(3,3)}),
|
||||
"Failed destination interleave, type simple 1"
|
||||
);
|
||||
assert_eq!(
|
||||
transfer3_map((2, 1)),
|
||||
Some(vec! {(5,3)}),
|
||||
"Failed destination interleave, type simple 2"
|
||||
);
|
||||
assert_eq!(
|
||||
transfer3_map((1, 2)),
|
||||
Some(vec! {(3,6)}),
|
||||
"Failed destination interleave, type simple 3"
|
||||
);
|
||||
assert_eq!(
|
||||
transfer3_map((2, 2)),
|
||||
Some(vec! {(5,6)}),
|
||||
"Failed destination interleave, type simple 4"
|
||||
);
|
||||
}
|
||||
|
||||
#[test]
|
||||
#[wasm_bindgen_test]
|
||||
fn test_replicate_transfer() {
|
||||
let source = Plate::new(PlateType::Source, PlateFormat::W96);
|
||||
let destination = Plate::new(PlateType::Destination, PlateFormat::W384);
|
||||
|
||||
let transfer1 = TransferRegion {
|
||||
source_plate: source,
|
||||
source_region: Region::Rect((1, 1), (2, 2)),
|
||||
dest_plate: destination,
|
||||
dest_region: Region::Rect((2, 2), (11, 11)),
|
||||
interleave_source: (1, 1),
|
||||
interleave_dest: (3, 3),
|
||||
};
|
||||
let transfer1_map = transfer1.calculate_map();
|
||||
assert_eq!(
|
||||
transfer1_map((1, 1)),
|
||||
Some(vec! {(2, 2), (2, 8), (8, 2), (8, 8)}),
|
||||
"Failed type replicate 1"
|
||||
);
|
||||
assert_eq!(
|
||||
transfer1_map((2, 1)),
|
||||
Some(vec! {(5, 2), (5, 8), (11, 2), (11, 8)}),
|
||||
"Failed type replicate 1"
|
||||
);
|
||||
|
||||
let transfer2 = TransferRegion {
|
||||
source_plate: Plate::new(PlateType::Source, PlateFormat::W384),
|
||||
dest_plate: Plate::new(PlateType::Destination, PlateFormat::W384),
|
||||
source_region: Region::Rect((1, 1), (2, 3)),
|
||||
dest_region: Region::Rect((2, 2), (11, 16)),
|
||||
interleave_source: (1, 1),
|
||||
interleave_dest: (2, 2),
|
||||
};
|
||||
let transfer2_source = transfer2.get_source_wells();
|
||||
let transfer2_dest = transfer2.get_destination_wells();
|
||||
assert_eq!(
|
||||
transfer2_source,
|
||||
vec![(1, 1), (1, 2), (1, 3), (2, 1), (2, 2), (2, 3)],
|
||||
"Failed type replicate 2 source"
|
||||
);
|
||||
assert_eq!(
|
||||
transfer2_dest,
|
||||
vec![
|
||||
(2, 2),
|
||||
(2, 8),
|
||||
(6, 2),
|
||||
(6, 8),
|
||||
(2, 4),
|
||||
(2, 10),
|
||||
(6, 4),
|
||||
(6, 10),
|
||||
(2, 6),
|
||||
(2, 12),
|
||||
(6, 6),
|
||||
(6, 12),
|
||||
(4, 2),
|
||||
(4, 8),
|
||||
(8, 2),
|
||||
(8, 8),
|
||||
(4, 4),
|
||||
(4, 10),
|
||||
(8, 4),
|
||||
(8, 10),
|
||||
(4, 6),
|
||||
(4, 12),
|
||||
(8, 6),
|
||||
(8, 12)
|
||||
],
|
||||
"Failed type replicate 2 destination"
|
||||
);
|
||||
}
|
||||
|
||||
#[test]
|
||||
#[wasm_bindgen_test]
|
||||
fn test_pooling_transfer() {
|
||||
let transfer1 = TransferRegion {
|
||||
source_plate: Plate::new(PlateType::Source, PlateFormat::W384),
|
||||
dest_plate: Plate::new(PlateType::Destination, PlateFormat::W384),
|
||||
source_region: Region::Rect((1, 4), (3, 7)),
|
||||
dest_region: Region::Point((1, 9)),
|
||||
interleave_source: (1, 1),
|
||||
interleave_dest: (0, 2),
|
||||
};
|
||||
//let transfer1_source = transfer1.get_source_wells();
|
||||
let mut transfer1_dest = transfer1.get_destination_wells();
|
||||
transfer1_dest.sort();
|
||||
transfer1_dest.dedup(); // Makes our check easier, otherwise we have repeated wells
|
||||
let transfer1_map = transfer1.calculate_map();
|
||||
// Skipping source check---it's just 12 wells.
|
||||
assert_eq!(
|
||||
transfer1_dest,
|
||||
vec![(1, 9), (1, 11), (1, 13), (1, 15)],
|
||||
"Failed type pool 1 dest"
|
||||
);
|
||||
assert_eq!(
|
||||
transfer1_map((2, 6)),
|
||||
Some(vec![(1, 13)]),
|
||||
"Failed type pool 1 map 1"
|
||||
);
|
||||
assert_eq!(
|
||||
transfer1_map((3, 7)),
|
||||
Some(vec![(1, 15)]),
|
||||
"Failed type pool 1 map 2"
|
||||
);
|
||||
}
|
||||
}
|
||||
|
|
@ -1,70 +0,0 @@
|
|||
pub fn letters_to_num(letters: &str) -> Option<u8> {
|
||||
let mut num: u8 = 0;
|
||||
for (i, letter) in letters.to_ascii_uppercase().chars().rev().enumerate() {
|
||||
log::debug!("{}, {}", i, letter);
|
||||
let n = letter as u8;
|
||||
if !(65..=90).contains(&n) {
|
||||
return None;
|
||||
}
|
||||
num = num.checked_add((26_i32.pow(i as u32) * (n as i32 - 64)).try_into().ok()?)?;
|
||||
}
|
||||
Some(num)
|
||||
}
|
||||
pub fn num_to_letters(num: u8) -> Option<String> {
|
||||
if num == 0 {
|
||||
return None;
|
||||
} // Otherwise, we will not return none!
|
||||
// As another note, we can't represent higher than "IV" anyway;
|
||||
// thus there's no reason for a loop (26^n with n>1 will NOT occur).
|
||||
let mut text = "".to_string();
|
||||
let mut digit1 = num.div_euclid(26u8);
|
||||
let mut digit2 = num.rem_euclid(26u8);
|
||||
if digit1 > 0 && digit2 == 0u8 {
|
||||
digit1 -= 1;
|
||||
digit2 = 26;
|
||||
}
|
||||
if digit1 != 0 {
|
||||
text.push((64 + digit1) as char)
|
||||
}
|
||||
text.push((64 + digit2) as char);
|
||||
|
||||
Some(text.to_string())
|
||||
}
|
||||
|
||||
#[cfg(test)]
|
||||
mod tests {
|
||||
use super::{letters_to_num, num_to_letters, RegionDisplay};
|
||||
|
||||
#[test]
|
||||
fn test_letters_to_num() {
|
||||
assert_eq!(letters_to_num("D"), Some(4));
|
||||
assert_eq!(letters_to_num("d"), None);
|
||||
assert_eq!(letters_to_num("AD"), Some(26 + 4));
|
||||
assert_eq!(letters_to_num("CG"), Some(3 * 26 + 7));
|
||||
}
|
||||
|
||||
#[test]
|
||||
fn test_num_to_letters() {
|
||||
println!("27 is {:?}", num_to_letters(27));
|
||||
assert_eq!(num_to_letters(1), Some("A".to_string()));
|
||||
assert_eq!(num_to_letters(26), Some("Z".to_string()));
|
||||
assert_eq!(num_to_letters(27), Some("AA".to_string()));
|
||||
assert_eq!(num_to_letters(111), Some("DG".to_string()));
|
||||
}
|
||||
|
||||
#[test]
|
||||
fn test_l2n_and_n2l() {
|
||||
assert_eq!(
|
||||
num_to_letters(letters_to_num("A").unwrap()),
|
||||
Some("A".to_string())
|
||||
);
|
||||
assert_eq!(
|
||||
num_to_letters(letters_to_num("BJ").unwrap()),
|
||||
Some("BJ".to_string())
|
||||
);
|
||||
for i in 1..=255 {
|
||||
assert_eq!(letters_to_num(&num_to_letters(i).unwrap()), Some(i));
|
||||
}
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -2,7 +2,7 @@
|
|||
use crate::transfer::Transfer;
|
||||
use crate::util::*;
|
||||
|
||||
use serde::{Serialize, Deserialize};
|
||||
use serde::{Deserialize, Serialize};
|
||||
use std::error::Error;
|
||||
|
||||
#[derive(Serialize, Deserialize, Debug)]
|
||||
|
|
@ -11,18 +11,28 @@ pub struct TransferRecord {
|
|||
pub source_plate: String,
|
||||
#[serde(rename = "Source Well", alias = "source well", alias = "src well")]
|
||||
pub source_well: String,
|
||||
#[serde(rename = "Dest Plate", alias = "dest plate", alias = "destination plate")]
|
||||
#[serde(
|
||||
rename = "Dest Plate",
|
||||
alias = "dest plate",
|
||||
alias = "destination plate"
|
||||
)]
|
||||
pub destination_plate: String,
|
||||
#[serde(rename = "Destination Well", alias = "destination well", alias = "dest well")]
|
||||
#[serde(
|
||||
rename = "Destination Well",
|
||||
alias = "destination well",
|
||||
alias = "dest well"
|
||||
)]
|
||||
pub destination_well: String,
|
||||
#[serde(rename = "Transfer Volume", alias = "transfer volume")]
|
||||
#[serde(default = "volume_default")]
|
||||
pub volume: f32,
|
||||
#[serde(rename = "Concentration", alias = "concentration")]
|
||||
pub concentration: Option<f32>,
|
||||
}
|
||||
|
||||
/*
|
||||
*/
|
||||
pub fn volume_default() -> f32 {
|
||||
1f32
|
||||
}
|
||||
|
||||
pub fn transfer_to_records(
|
||||
tr: &Transfer,
|
||||
|
|
@ -60,3 +70,23 @@ pub fn records_to_csv(trs: Vec<TransferRecord>) -> Result<String, Box<dyn Error>
|
|||
let data = String::from_utf8(wtr.into_inner()?)?;
|
||||
Ok(data)
|
||||
}
|
||||
|
||||
pub fn read_csv(data: &str) -> Vec<TransferRecord> {
|
||||
let (header, data) = data.split_at(data.find('\n').unwrap());
|
||||
let modified: String = header.to_lowercase() + data;
|
||||
|
||||
let mut rdr = csv::Reader::from_reader(modified.as_bytes());
|
||||
let mut records: Vec<TransferRecord> = Vec::new();
|
||||
for record in rdr.deserialize::<TransferRecord>() {
|
||||
match record {
|
||||
Ok(r) => {
|
||||
//log::debug!("{:?}", r);
|
||||
records.push(r);
|
||||
}
|
||||
Err(e) => {
|
||||
log::debug!("{:?}", e);
|
||||
}
|
||||
}
|
||||
}
|
||||
records
|
||||
}
|
||||
|
|
|
|||
|
|
@ -0,0 +1,30 @@
|
|||
[package]
|
||||
name = "plate-tool-web"
|
||||
version = "0.2.0"
|
||||
edition = "2021"
|
||||
|
||||
# See more keys and their definitions at https://doc.rust-lang.org/cargo/reference/manifest.html
|
||||
|
||||
[dependencies]
|
||||
plate-tool-lib = { path = "../plate-tool-lib" }
|
||||
yew = { version = "0.20.0", features = ["csr"] }
|
||||
yewdux = "0.9"
|
||||
wasm-bindgen = "0.2"
|
||||
web-sys = { version = "0.3", features = ["FormData", "HtmlFormElement",
|
||||
"HtmlDialogElement", "Blob", "Url", "Window",
|
||||
"HtmlAnchorElement", "ReadableStream", "HtmlSelectElement", "HtmlOptionElement", "HtmlButtonElement",
|
||||
"FileReader"] }
|
||||
js-sys = "0.3"
|
||||
log = "0.4"
|
||||
wasm-logger = "0.2"
|
||||
regex = "1"
|
||||
lazy_static = "1.4"
|
||||
uuid = { version = "1.6", features = ["v7", "fast-rng", "macro-diagnostics", "js", "serde"] }
|
||||
serde = { version = "1.0", features = ["derive"] }
|
||||
serde_json = "1.0"
|
||||
csv = "1.2"
|
||||
getrandom = { version = "0.2", features = ["js"] }
|
||||
rand = { version = "0.8", features = ["small_rng"] }
|
||||
|
||||
[dev-dependencies]
|
||||
wasm-bindgen-test = "0.3.0"
|
||||
Binary file not shown.
Binary file not shown.
File diff suppressed because one or more lines are too long
|
|
@ -0,0 +1,608 @@
|
|||
@charset "UTF-8";
|
||||
/* ----------------- */
|
||||
/* Custom Properties */
|
||||
/* ----------------- */
|
||||
/*
|
||||
This values are to be overridden
|
||||
after being injected into
|
||||
the global scope.
|
||||
*/
|
||||
/* colors */
|
||||
/* Black */
|
||||
/* Gray */
|
||||
/* White */
|
||||
/* font */
|
||||
/* Sizes divided by 16 so values given in px */
|
||||
/* --------------- */
|
||||
/* Utility Classes */
|
||||
/* --------------- */
|
||||
/* Layouts */
|
||||
.container {
|
||||
padding-inline: 4rem;
|
||||
margin-inline: auto;
|
||||
max-width: 80rem;
|
||||
}
|
||||
|
||||
.flex {
|
||||
display: flex;
|
||||
gap: 2rem;
|
||||
}
|
||||
|
||||
.column {
|
||||
justify-content: center;
|
||||
align-items: center;
|
||||
flex-direction: column;
|
||||
align-content: center;
|
||||
}
|
||||
|
||||
.row {
|
||||
flex-direction: row;
|
||||
flex-wrap: wrap;
|
||||
justify-content: space-evenly;
|
||||
align-content: baseline;
|
||||
max-width: 100%;
|
||||
}
|
||||
|
||||
.two-columns {
|
||||
display: grid;
|
||||
/* Will shrink to one column, never exceed two!
|
||||
* The `max` in `minmax` asks that the columns
|
||||
* be no smaller */
|
||||
grid-template-columns: repeat(auto-fit, minmax(max(30rem, 40%), 1fr));
|
||||
column-gap: 1rem;
|
||||
justify-content: space-evenly;
|
||||
}
|
||||
|
||||
.lock-bottom {
|
||||
position: fixed;
|
||||
bottom: 0%;
|
||||
}
|
||||
|
||||
/* Other */
|
||||
.hr::after { /* Add fake hr after header */
|
||||
content: "";
|
||||
position: absolute;
|
||||
display: block;
|
||||
clear: both;
|
||||
width: 100%;
|
||||
height: 0.15rem;
|
||||
background-color: black;
|
||||
}
|
||||
|
||||
/* Color Classes */
|
||||
.bg-dark {
|
||||
background-color: #504d49;
|
||||
}
|
||||
|
||||
.bg-light {
|
||||
background-color: hsl(190, 80%, 30%);
|
||||
}
|
||||
|
||||
.bg-white {
|
||||
background-color: hsl(30, 5%, 90%);
|
||||
}
|
||||
|
||||
.text-dark {
|
||||
color: #504d49;
|
||||
}
|
||||
|
||||
.text-light {
|
||||
color: hsl(190, 80%, 30%);
|
||||
}
|
||||
|
||||
.text-white {
|
||||
color: hsl(30, 5%, 90%);
|
||||
}
|
||||
|
||||
/* Font Classes */
|
||||
.fs-900 {
|
||||
font-size: 6.25rem;
|
||||
}
|
||||
|
||||
.fs-800 {
|
||||
font-size: 4.6875rem;
|
||||
}
|
||||
|
||||
.fs-700 {
|
||||
font-size: 3.5rem;
|
||||
}
|
||||
|
||||
.fs-600 {
|
||||
font-size: 2rem;
|
||||
}
|
||||
|
||||
.fs-500 {
|
||||
font-size: 1.75rem;
|
||||
}
|
||||
|
||||
.fs-400 {
|
||||
font-size: 1.5rem;
|
||||
}
|
||||
|
||||
.fs-300 {
|
||||
font-size: 1.125rem;
|
||||
}
|
||||
|
||||
.fs-200 {
|
||||
font-size: 1rem;
|
||||
}
|
||||
|
||||
.ff-serif {
|
||||
font-family: "Inconsolata", monospace;
|
||||
}
|
||||
|
||||
.ff-sans-cond {
|
||||
font-family: sans-serif;
|
||||
}
|
||||
|
||||
.ff-sans {
|
||||
font-family: "Jost", sans-serif;
|
||||
}
|
||||
|
||||
.uppercase {
|
||||
text-transform: uppercase;
|
||||
}
|
||||
|
||||
.lowercase {
|
||||
text-transform: lowercase;
|
||||
}
|
||||
|
||||
/* Semantic Tags and Their Classes */
|
||||
header {
|
||||
margin-bottom: 3vh;
|
||||
}
|
||||
|
||||
section:not(:last-of-type) {
|
||||
margin-bottom: 3vh;
|
||||
}
|
||||
|
||||
footer {
|
||||
margin-top: 3vh;
|
||||
}
|
||||
|
||||
/* ----- */
|
||||
/* Reset */
|
||||
/* ----- */
|
||||
*,
|
||||
*::before,
|
||||
*::after {
|
||||
box-sizing: border-box;
|
||||
}
|
||||
|
||||
body, h1, h2, h3, h4, h5, h6, p {
|
||||
margin: 0;
|
||||
}
|
||||
|
||||
h1, h2, h3, h4, h5, h6, p {
|
||||
font-weight: 400;
|
||||
}
|
||||
|
||||
h1, h2, h3 {
|
||||
line-height: 1.1;
|
||||
}
|
||||
|
||||
body {
|
||||
font-family: "Jost", sans-serif;
|
||||
font-size: 1.5rem;
|
||||
color: #504d49;
|
||||
background-color: hsl(30, 5%, 90%);
|
||||
line-height: 1.5;
|
||||
min-height: 100vh;
|
||||
}
|
||||
|
||||
main {
|
||||
margin-left: 1vw;
|
||||
margin-top: 1vh;
|
||||
}
|
||||
main * {
|
||||
z-index: 2;
|
||||
}
|
||||
|
||||
footer {
|
||||
z-index: 2;
|
||||
}
|
||||
|
||||
img, picture {
|
||||
max-width: 100%;
|
||||
display: block;
|
||||
}
|
||||
|
||||
input, button, textarea, select {
|
||||
font: inherit;
|
||||
}
|
||||
|
||||
@media (prefers-reduced-motion: reduce) {
|
||||
*,
|
||||
*::before,
|
||||
*::after {
|
||||
animation-duration: 0.01ms !important;
|
||||
animation-iteration-count: 1 !important;
|
||||
transition-duration: 0.01ms !important;
|
||||
scroll-behaviour: auto !important;
|
||||
}
|
||||
}
|
||||
/* -------------------- */
|
||||
/* Non-Reusable Classes */
|
||||
/* -------------------- */
|
||||
/* meant for these pages
|
||||
* only, not to be used
|
||||
* in practice */
|
||||
.colors--block {
|
||||
padding: 3rem 1rem 1rem;
|
||||
border: 1px solid black;
|
||||
}
|
||||
|
||||
@font-face {
|
||||
font-family: "Inconsolata";
|
||||
src: url("/fonts/Inconsolata.ttf");
|
||||
font-display: swap;
|
||||
font-variation-settings: "wdth" 85;
|
||||
}
|
||||
@font-face {
|
||||
font-family: "Jost";
|
||||
src: url("/fonts/Jost.ttf");
|
||||
font-display: swap;
|
||||
}
|
||||
body {
|
||||
overflow: hidden;
|
||||
height: 100%;
|
||||
}
|
||||
|
||||
div.main_container {
|
||||
height: 97vh;
|
||||
width: 98vw;
|
||||
margin-top: 2.5vh;
|
||||
margin-left: 1vw;
|
||||
display: grid;
|
||||
grid-template-columns: [left] minmax(min-content, 1fr) [right] 2fr;
|
||||
grid-template-rows: [upper] 2fr [lower] 1fr;
|
||||
column-gap: 1vw;
|
||||
row-gap: 1vh;
|
||||
}
|
||||
|
||||
.dialog {
|
||||
padding: 1em;
|
||||
}
|
||||
|
||||
.dialog::backdrop {
|
||||
background: rgba(0, 125, 255, 0.3);
|
||||
}
|
||||
|
||||
div.plate_container {
|
||||
display: flex;
|
||||
flex-direction: column;
|
||||
justify-content: space-evenly;
|
||||
align-items: center;
|
||||
border: 2px solid #504d49;
|
||||
grid-column: right/right;
|
||||
grid-row: upper/3;
|
||||
}
|
||||
div.plate_container h2 {
|
||||
margin-bottom: 1%;
|
||||
text-align: center;
|
||||
}
|
||||
div.plate_container > div {
|
||||
display: grid;
|
||||
grid-template-rows: auto auto;
|
||||
grid-template-rows: auto auto;
|
||||
}
|
||||
div.plate_container > div > h2:nth-of-type(1) {
|
||||
grid-column: 2;
|
||||
grid-row: 1;
|
||||
}
|
||||
div.plate_container > div > h2:nth-of-type(2) {
|
||||
grid-column: 1;
|
||||
grid-row: 2;
|
||||
writing-mode: vertical-rl;
|
||||
transform: rotate(-180deg);
|
||||
}
|
||||
div.plate_container > div > div {
|
||||
grid-column: 2;
|
||||
grid-row: 2;
|
||||
}
|
||||
|
||||
div.source_plate, div.dest_plate {
|
||||
padding: 3px 3px 3px 3px;
|
||||
}
|
||||
|
||||
div.source_plate {
|
||||
border: 2px solid blue;
|
||||
}
|
||||
|
||||
div.dest_plate {
|
||||
border: 2px solid red;
|
||||
}
|
||||
|
||||
table, tr, td {
|
||||
user-select: none; /* Prevents dragging issue */
|
||||
border-spacing: 0px;
|
||||
}
|
||||
|
||||
th {
|
||||
font-family: monospace;
|
||||
}
|
||||
|
||||
td.plate_cell {
|
||||
background: none;
|
||||
}
|
||||
|
||||
div.plate_cell_inner {
|
||||
aspect-ratio: 1/1;
|
||||
height: 90%;
|
||||
border-radius: 50%;
|
||||
border: 1px solid black;
|
||||
}
|
||||
|
||||
td.plate_cell:hover div.plate_cell_inner {
|
||||
background: black !important;
|
||||
}
|
||||
|
||||
td.plate_cell.in_transfer div.plate_cell_inner::after {
|
||||
content: "";
|
||||
width: 100%;
|
||||
height: 100%;
|
||||
display: block;
|
||||
border-radius: 50%;
|
||||
background-image: repeating-linear-gradient(45deg, rgba(0, 0, 0, 0.8), rgba(0, 0, 0, 0.8) 2px, transparent 2px, transparent 5px);
|
||||
}
|
||||
|
||||
td.current_select div.plate_cell_inner {
|
||||
border: 3px solid black;
|
||||
}
|
||||
|
||||
.W1536 th {
|
||||
font-size: 0.9rem;
|
||||
}
|
||||
|
||||
.W3456 th {
|
||||
font-size: 0.9rem;
|
||||
line-height: 0px;
|
||||
padding-bottom: 0.4rem;
|
||||
}
|
||||
|
||||
div.tree {
|
||||
position: relative;
|
||||
grid-column: left/left;
|
||||
grid-row: upper/upper;
|
||||
width: 100%;
|
||||
height: 100%;
|
||||
border: 2px solid #504d49;
|
||||
}
|
||||
div.tree h3 {
|
||||
margin-left: 0.5rem;
|
||||
}
|
||||
div.tree div#controls {
|
||||
position: absolute;
|
||||
bottom: 2%;
|
||||
right: 2%;
|
||||
}
|
||||
|
||||
div.tree ul {
|
||||
width: 80%;
|
||||
margin-left: 10%;
|
||||
padding: 0;
|
||||
display: flex;
|
||||
flex-direction: column;
|
||||
align-items: stretch;
|
||||
overflow: scroll;
|
||||
}
|
||||
|
||||
div.tree li {
|
||||
display: inline;
|
||||
margin-left: 0;
|
||||
margin-bottom: 0.4rem;
|
||||
border: 2px solid transparent;
|
||||
user-select: none;
|
||||
list-style: none;
|
||||
line-height: 1em;
|
||||
}
|
||||
div.tree li:hover {
|
||||
background: rgba(15, 117, 138, 0.08);
|
||||
border: 2px solid rgba(15, 117, 138, 0.3);
|
||||
}
|
||||
div.tree li.selected {
|
||||
background: rgba(15, 117, 138, 0.2);
|
||||
}
|
||||
|
||||
div.transfer_menu {
|
||||
position: relative;
|
||||
width: 100%;
|
||||
height: 100%;
|
||||
grid-column: left/left;
|
||||
grid-row: lower/lower;
|
||||
border: 2px solid #504d49;
|
||||
padding-left: 0.5rem;
|
||||
}
|
||||
div.transfer_menu form {
|
||||
padding-top: 3%;
|
||||
padding-bottom: 1%;
|
||||
display: flex;
|
||||
flex-direction: column;
|
||||
justify-content: flex-start;
|
||||
align-items: flex-start;
|
||||
}
|
||||
div.transfer_menu form label {
|
||||
display: inline;
|
||||
}
|
||||
div.transfer_menu form label * {
|
||||
display: inline;
|
||||
}
|
||||
div.transfer_menu input:invalid {
|
||||
background-color: #faa;
|
||||
}
|
||||
div.transfer_menu div#controls {
|
||||
align-self: flex-end;
|
||||
}
|
||||
div.transfer_menu div#controls input {
|
||||
padding: 2px 3px 2px 3px;
|
||||
margin-left: 0;
|
||||
}
|
||||
|
||||
input {
|
||||
text-align: center;
|
||||
margin-left: 0.5em;
|
||||
margin-right: 0.5em;
|
||||
margin-top: 1%;
|
||||
margin-bottom: 1%;
|
||||
line-height: 1em;
|
||||
padding: 0;
|
||||
}
|
||||
input[type=text] {
|
||||
width: 4em;
|
||||
}
|
||||
input[name=name] {
|
||||
width: 6em;
|
||||
}
|
||||
input[type=number] {
|
||||
width: 2em;
|
||||
-webkit-appearance: none;
|
||||
-moz-appearance: textfield;
|
||||
}
|
||||
input.volume_input {
|
||||
width: 4em;
|
||||
}
|
||||
|
||||
div.upper_menu {
|
||||
position: absolute;
|
||||
top: 0px;
|
||||
left: 0px;
|
||||
height: min(2.5vh, 25px);
|
||||
padding-left: 1vw;
|
||||
visibility: inherit;
|
||||
display: flex;
|
||||
}
|
||||
div.upper_menu div.dropdown {
|
||||
margin-right: 2px;
|
||||
position: relative;
|
||||
display: flex;
|
||||
flex-direction: column;
|
||||
}
|
||||
div.upper_menu div.dropdown button {
|
||||
vertical-align: top;
|
||||
border: none;
|
||||
padding: 0px 0.4em 0px 0.4em;
|
||||
margin: 0;
|
||||
cursor: pointer;
|
||||
font-size: calc(min(2.5vh, 25px) * 0.7);
|
||||
}
|
||||
div.upper_menu div.dropdown * {
|
||||
visibility: hidden;
|
||||
}
|
||||
div.upper_menu div.dropdown > *:first-child {
|
||||
outline: 1px solid #504d49;
|
||||
visibility: visible;
|
||||
}
|
||||
div.upper_menu div.dropdown:hover {
|
||||
outline: 2px solid #504d49;
|
||||
z-index: 2;
|
||||
}
|
||||
div.upper_menu div.dropdown:hover * {
|
||||
visibility: visible;
|
||||
outline: 1px solid #504d49;
|
||||
box-shadow: 0px 8px 16px 0px rgba(0, 0, 0, 0.4);
|
||||
z-index: 1;
|
||||
}
|
||||
div.upper_menu div.dropdown-sub {
|
||||
position: relative;
|
||||
height: min(2.5vh, 25px);
|
||||
}
|
||||
div.upper_menu div.dropdown-sub * {
|
||||
visibility: hidden;
|
||||
}
|
||||
div.upper_menu div.dropdown-sub div {
|
||||
display: none;
|
||||
visibility: hidden;
|
||||
}
|
||||
div.upper_menu div.dropdown-sub > *:first-child {
|
||||
visibility: inherit;
|
||||
}
|
||||
div.upper_menu div.dropdown-sub:hover {
|
||||
visibility: visible;
|
||||
}
|
||||
div.upper_menu div.dropdown-sub:hover div {
|
||||
position: absolute;
|
||||
left: 100%;
|
||||
top: 0;
|
||||
visibility: hidden;
|
||||
display: flex;
|
||||
flex-direction: column;
|
||||
width: max-content;
|
||||
}
|
||||
|
||||
dialog {
|
||||
border: 3px solid #504d49;
|
||||
border-radius: 2%;
|
||||
color: #504d49;
|
||||
background: hsl(30, 5%, 90%);
|
||||
}
|
||||
|
||||
dialog > form[method=dialog] {
|
||||
position: absolute;
|
||||
top: 0;
|
||||
right: 0;
|
||||
line-height: 0px;
|
||||
}
|
||||
dialog > form[method=dialog] button {
|
||||
padding-top: 6px;
|
||||
padding-left: 3px;
|
||||
font-size: 150%;
|
||||
line-height: 0px;
|
||||
color: #504d49;
|
||||
border: 0;
|
||||
background: transparent;
|
||||
}
|
||||
dialog > form[method=dialog] button::before {
|
||||
text-align: center;
|
||||
vertical-align: middle;
|
||||
content: "×";
|
||||
}
|
||||
dialog > form[method=dialog] button:hover {
|
||||
color: black;
|
||||
transition: color 0.1s;
|
||||
}
|
||||
|
||||
.close_button {
|
||||
color: red;
|
||||
position: absolute;
|
||||
top: 5%;
|
||||
right: 2%;
|
||||
background: rgba(0, 0, 0, 0.1);
|
||||
}
|
||||
.close_button:hover {
|
||||
color: rgb(0, 255, 255);
|
||||
background: rgba(0, 0, 0, 0.8);
|
||||
}
|
||||
|
||||
.fs-900 {
|
||||
font-size: 6.25rem;
|
||||
font-weight: 400;
|
||||
}
|
||||
|
||||
.fs-800 {
|
||||
font-size: 4.6875rem;
|
||||
font-weight: 300;
|
||||
}
|
||||
|
||||
.fs-700 {
|
||||
font-size: 3.5rem;
|
||||
font-weight: 250;
|
||||
}
|
||||
|
||||
.fs-600 {
|
||||
font-size: 2rem;
|
||||
font-weight: 300;
|
||||
}
|
||||
|
||||
.fs-500 {
|
||||
font-size: 1.75rem;
|
||||
font-weight: 200;
|
||||
}
|
||||
|
||||
.fs-400 {
|
||||
font-size: 1.5rem;
|
||||
font-weight: 200;
|
||||
}
|
||||
|
||||
html {
|
||||
font-size: 1vmin;
|
||||
}
|
||||
|
|
@ -0,0 +1,146 @@
|
|||
<!DOCTYPE html><html><head>
|
||||
<meta charset="utf-8">
|
||||
<link rel="stylesheet" href="/index-136b7d4afc3986e5.css" integrity="sha384-K1xb_hlSB1PuzRgXufX4uYfJCrimViJUZLwHuy2nqRmgR8LHKEVguY8A1ceunwFf">
|
||||
|
||||
<script src="/screenshot_utility-18639e2bdd58e7f7.js" integrity="sha384-rRHgJ-Dx271W2uHdkpxy2XEPlo_9wIonkalIbWq_EVn9y0FO8L9MF96Oz57FVXeu"></script>
|
||||
<script src="/html2canvas-bafc21265de2354d.js" integrity="sha384-q0KsXOmCeCEoVzvj91Xfq-Z9A_MA9_K7PhfVXTTZHQiZ-snp_JlaXl08LNAT7mrM"></script>
|
||||
<title>Plate Tool</title>
|
||||
|
||||
<link rel="preload" href="/plate-tool-web-6c71e2a649203e02_bg.wasm" as="fetch" type="application/wasm" crossorigin="anonymous" integrity="sha384-ZLrGyVAnMTOTUFsd2bIX3oxXsct5Ze-_BbG7YdSAxS-Q8hyJIZNfPBb5LJ6rpPrE">
|
||||
<link rel="modulepreload" href="/plate-tool-web-6c71e2a649203e02.js" crossorigin="anonymous" integrity="sha384-o-MTA3ga5eJ_8m7WwV3axAGC2KE2rSO345Jk7g7PonnYbt0H_wRHpLIdWZUB1eBv"></head>
|
||||
<body>
|
||||
|
||||
<script type="module">
|
||||
import init, * as bindings from '/plate-tool-web-6c71e2a649203e02.js';
|
||||
init('/plate-tool-web-6c71e2a649203e02_bg.wasm');
|
||||
window.wasmBindings = bindings;
|
||||
|
||||
</script><script>"use strict";
|
||||
|
||||
(function () {
|
||||
|
||||
const address = '{{__TRUNK_ADDRESS__}}';
|
||||
let protocol = '';
|
||||
protocol =
|
||||
protocol
|
||||
? protocol
|
||||
: window.location.protocol === 'https:'
|
||||
? 'wss'
|
||||
: 'ws';
|
||||
const url = protocol + '://' + address + '/_trunk/ws';
|
||||
|
||||
class Overlay {
|
||||
constructor() {
|
||||
// create an overlay
|
||||
this._overlay = document.createElement("div");
|
||||
const style = this._overlay.style;
|
||||
style.height = "100vh";
|
||||
style.width = "100vw";
|
||||
style.position = "fixed";
|
||||
style.top = "0";
|
||||
style.left = "0";
|
||||
style.backgroundColor = "rgba(222, 222, 222, 0.5)";
|
||||
style.fontFamily = "sans-serif";
|
||||
// not sure that's the right approach
|
||||
style.zIndex = "1000000";
|
||||
style.backdropFilter = "blur(1rem)";
|
||||
|
||||
const container = document.createElement("div");
|
||||
// center it
|
||||
container.style.position = "absolute";
|
||||
container.style.top = "30%";
|
||||
container.style.left = "15%";
|
||||
container.style.maxWidth = "85%";
|
||||
|
||||
this._title = document.createElement("div");
|
||||
this._title.innerText = "Build failure";
|
||||
this._title.style.paddingBottom = "2rem";
|
||||
this._title.style.fontSize = "2.5rem";
|
||||
|
||||
this._message = document.createElement("div");
|
||||
this._message.style.whiteSpace = "pre-wrap";
|
||||
|
||||
const icon= document.createElement("div");
|
||||
icon.innerHTML = '<svg xmlns="http://www.w3.org/2000/svg" width="64" height="64" fill="#dc3545" viewBox="0 0 16 16"><path d="M8.982 1.566a1.13 1.13 0 0 0-1.96 0L.165 13.233c-.457.778.091 1.767.98 1.767h13.713c.889 0 1.438-.99.98-1.767L8.982 1.566zM8 5c.535 0 .954.462.9.995l-.35 3.507a.552.552 0 0 1-1.1 0L7.1 5.995A.905.905 0 0 1 8 5zm.002 6a1 1 0 1 1 0 2 1 1 0 0 1 0-2z"/></svg>';
|
||||
this._title.prepend(icon);
|
||||
|
||||
container.append(this._title, this._message);
|
||||
this._overlay.append(container);
|
||||
|
||||
this._inject();
|
||||
window.setInterval(() => {
|
||||
this._inject();
|
||||
}, 250);
|
||||
}
|
||||
|
||||
set reason(reason) {
|
||||
this._message.textContent = reason;
|
||||
}
|
||||
|
||||
_inject() {
|
||||
if (!this._overlay.isConnected) {
|
||||
// prepend it
|
||||
document.body?.prepend(this._overlay);
|
||||
}
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
class Client {
|
||||
constructor(url) {
|
||||
this.url = url;
|
||||
this.poll_interval = 5000;
|
||||
this._overlay = null;
|
||||
}
|
||||
|
||||
start() {
|
||||
const ws = new WebSocket(this.url);
|
||||
ws.onmessage = (ev) => {
|
||||
const msg = JSON.parse(ev.data);
|
||||
switch (msg.type) {
|
||||
case "reload":
|
||||
this.reload();
|
||||
break;
|
||||
case "buildFailure":
|
||||
this.buildFailure(msg.data)
|
||||
break;
|
||||
}
|
||||
};
|
||||
ws.onclose = this.onclose;
|
||||
}
|
||||
|
||||
onclose() {
|
||||
window.setTimeout(
|
||||
() => {
|
||||
// when we successfully reconnect, we'll force a
|
||||
// reload (since we presumably lost connection to
|
||||
// trunk due to it being killed, so it will have
|
||||
// rebuilt on restart)
|
||||
const ws = new WebSocket(this.url);
|
||||
ws.onopen = () => window.location.reload();
|
||||
ws.onclose = this.onclose;
|
||||
},
|
||||
this.poll_interval);
|
||||
}
|
||||
|
||||
reload() {
|
||||
window.location.reload();
|
||||
}
|
||||
|
||||
buildFailure({reason}) {
|
||||
// also log the console
|
||||
console.error("Build failed:", reason);
|
||||
|
||||
console.debug("Overlay", this._overlay);
|
||||
|
||||
if (!this._overlay) {
|
||||
this._overlay = new Overlay();
|
||||
}
|
||||
this._overlay.reason = reason;
|
||||
}
|
||||
}
|
||||
|
||||
new Client(url).start();
|
||||
|
||||
})()
|
||||
</script></body></html>
|
||||
File diff suppressed because it is too large
Load Diff
Binary file not shown.
|
|
@ -0,0 +1,25 @@
|
|||
function copy_screenshot(el) {
|
||||
html2canvas(el).then((canvas) => {
|
||||
console.log("Copying image to clipboard");
|
||||
canvas.toBlob((b) => {
|
||||
try {
|
||||
navigator.clipboard.write([
|
||||
new ClipboardItem({
|
||||
'image/png': b
|
||||
})
|
||||
]);
|
||||
} catch (e) {
|
||||
console.error("Failed to copy!");
|
||||
}
|
||||
});
|
||||
});
|
||||
}
|
||||
|
||||
function copy_screenshot_dest() {
|
||||
let plate = document.getElementsByClassName("dest_plate")[0];
|
||||
copy_screenshot(plate);
|
||||
}
|
||||
function copy_screenshot_src() {
|
||||
let plate = document.getElementsByClassName("source_plate")[0];
|
||||
copy_screenshot(plate);
|
||||
}
|
||||
|
|
@ -104,22 +104,7 @@ pub fn import_transfer_csv_onload_callback(
|
|||
) -> Closure<dyn FnMut(Event)> {
|
||||
Closure::<dyn FnMut(_)>::new(move |_: Event| {
|
||||
if let Some(value) = &file_reader.result().ok().and_then(|v| v.as_string()) {
|
||||
let (header, data) = value.split_at(value.find('\n').unwrap());
|
||||
let modified: String = header.to_lowercase() + data;
|
||||
log::info!("{}", modified);
|
||||
let mut rdr = csv::Reader::from_reader(value.as_bytes());
|
||||
let mut records = Vec::new();
|
||||
for record in rdr.deserialize::<plate_tool_lib::csv::TransferRecord>() {
|
||||
match record {
|
||||
Ok(r) => {
|
||||
//log::debug!("{:?}", r);
|
||||
records.push(r);
|
||||
}
|
||||
Err(e) => {
|
||||
log::debug!("{:?}", e);
|
||||
}
|
||||
}
|
||||
}
|
||||
let records = plate_tool_lib::csv::read_csv(value);
|
||||
|
||||
let mut sources: HashSet<String> = HashSet::new();
|
||||
let mut destinations: HashSet<String> = HashSet::new();
|
||||
|
|
@ -1,4 +1,4 @@
|
|||
use plate_tool::App;
|
||||
use plate_tool_web::App;
|
||||
|
||||
fn main() {
|
||||
wasm_logger::init(wasm_logger::Config::default());
|
||||
Loading…
Reference in New Issue