Squashed commit of the following:

commit 5e1137c460
Author: Emilia <contact@emiliaallison.com>
Date:   Fri Dec 29 18:03:00 2023 -0500

    Fix: indexing error w.r.t. logarithm argument

commit 535b14a586
Author: Emilia <contact@emiliaallison.com>
Date:   Fri Dec 29 18:02:00 2023 -0500

    Space colors evenly, consistently, etc

    Colors should now:
    	- Not change if new transfers are added
    	- Be evenly spaced throughout the palette
    	- Be persistent across refreshes

commit 6e08f47955
Author: Emilia <contact@emiliaallison.com>
Date:   Fri Dec 29 18:01:00 2023 -0500

    Add palette function for ordered ids

    Given an id and a list of sorted ids, yields a color

commit 88e838e102
Author: Emilia <contact@emiliaallison.com>
Date:   Fri Dec 29 18:00:00 2023 -0500

    Switch to v7 UUIDs from v4

    v7 UUIDs are timestamp based and thus we can establish a useful
    total ordering over them; will base colors on this
This commit is contained in:
Emilia Allison 2023-12-29 18:05:00 -05:00
parent 85d4b30d47
commit ec37887c2f
Signed by: emilia
GPG Key ID: 7A3F8997BFE894E0
7 changed files with 55 additions and 15 deletions

15
Cargo.lock generated
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@ -34,6 +34,12 @@ dependencies = [
"syn 2.0.16", "syn 2.0.16",
] ]
[[package]]
name = "atomic"
version = "0.5.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "c59bdb34bc650a32731b31bd8f0829cc15d24a708ee31559e0bb34f2bc320cba"
[[package]] [[package]]
name = "autocfg" name = "autocfg"
version = "1.1.0" version = "1.1.0"
@ -885,10 +891,11 @@ checksum = "e5464a87b239f13a63a501f2701565754bae92d243d4bb7eb12f6d57d2269bf4"
[[package]] [[package]]
name = "uuid" name = "uuid"
version = "1.3.3" version = "1.6.1"
source = "registry+https://github.com/rust-lang/crates.io-index" source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "345444e32442451b267fc254ae85a209c64be56d2890e601a0c37ff0c3c5ecd2" checksum = "5e395fcf16a7a3d8127ec99782007af141946b4795001f876d54fb0d55978560"
dependencies = [ dependencies = [
"atomic",
"getrandom", "getrandom",
"rand", "rand",
"serde", "serde",
@ -898,9 +905,9 @@ dependencies = [
[[package]] [[package]]
name = "uuid-macro-internal" name = "uuid-macro-internal"
version = "1.3.3" version = "1.6.1"
source = "registry+https://github.com/rust-lang/crates.io-index" source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "3f67b459f42af2e6e1ee213cb9da4dbd022d3320788c3fb3e1b893093f1e45da" checksum = "f49e7f3f3db8040a100710a11932239fd30697115e2ba4107080d8252939845e"
dependencies = [ dependencies = [
"proc-macro2", "proc-macro2",
"quote", "quote",

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@ -18,7 +18,7 @@ log = "0.4"
wasm-logger = "0.2" wasm-logger = "0.2"
regex = "1" regex = "1"
lazy_static = "1.4" lazy_static = "1.4"
uuid = { version = "1.3", features = ["v4", "fast-rng", "macro-diagnostics", "js", "serde"] } uuid = { version = "1.6", features = ["v7", "fast-rng", "macro-diagnostics", "js", "serde"] }
serde = { version = "1.0", features = ["derive"] } serde = { version = "1.0", features = ["derive"] }
serde_json = "1.0" serde_json = "1.0"
csv = "1.2" csv = "1.2"

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@ -41,6 +41,14 @@ pub fn DestinationPlate(props: &DestinationPlateProps) -> Html {
} }
let destination_wells = ct_state.transfer.transfer_region.get_destination_wells(); let destination_wells = ct_state.transfer.transfer_region.get_destination_wells();
let ordered_ids: Vec<uuid::Uuid> = {
let mut ids: Vec<uuid::Uuid> = main_state.transfers.clone().iter()
.map(|x| x.id)
.collect();
ids.sort_unstable();
ids
};
let mouse_callback = { let mouse_callback = {
let m_start_handle = m_start_handle.clone(); let m_start_handle = m_start_handle.clone();
let m_end_handle = m_end_handle.clone(); let m_end_handle = m_end_handle.clone();
@ -118,7 +126,7 @@ pub fn DestinationPlate(props: &DestinationPlateProps) -> Html {
in_transfer={destination_wells.contains(&(i,j))} in_transfer={destination_wells.contains(&(i,j))}
color={transfer_map.get(&(i,j)) color={transfer_map.get(&(i,j))
.and_then(|t| t.last()) .and_then(|t| t.last())
.map(|t| PALETTE.get_uuid(t.get_uuid())) .map(|t| PALETTE.get_ordered(t.get_uuid(), &ordered_ids))
} }
cell_height={props.cell_height} cell_height={props.cell_height}
title={transfer_map.get(&(i,j)).map(|transfers| format!("Used by: {}", transfers.iter().map(|t| t.name.clone()) title={transfer_map.get(&(i,j)).map(|transfers| format!("Used by: {}", transfers.iter().map(|t| t.name.clone())

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@ -61,6 +61,14 @@ pub fn SourcePlate(props: &SourcePlateProps) -> Html {
let source_wells = ct_state.transfer.transfer_region.get_source_wells(); let source_wells = ct_state.transfer.transfer_region.get_source_wells();
let ordered_ids: Vec<uuid::Uuid> = {
let mut ids: Vec<uuid::Uuid> = main_state.transfers.clone().iter()
.map(|x| x.id)
.collect();
ids.sort_unstable();
ids
};
let mouse_callback = { let mouse_callback = {
let m_start_handle = m_start_handle.clone(); let m_start_handle = m_start_handle.clone();
let m_end_handle = m_end_handle.clone(); let m_end_handle = m_end_handle.clone();
@ -122,7 +130,7 @@ pub fn SourcePlate(props: &SourcePlateProps) -> Html {
in_transfer={source_wells.contains(&(i,j))} in_transfer={source_wells.contains(&(i,j))}
color={transfer_map.get(&(i,j)) color={transfer_map.get(&(i,j))
.and_then(|t| t.last()) .and_then(|t| t.last())
.map(|t| PALETTE.get_uuid(t.get_uuid())) .map(|t| PALETTE.get_ordered(t.get_uuid(), &ordered_ids))
} }
cell_height={props.cell_height} cell_height={props.cell_height}
title={transfer_map.get(&(i,j)).map(|transfers| format!("Used by: {}", transfers.iter().map(|t| t.name.clone()) title={transfer_map.get(&(i,j)).map(|transfers| format!("Used by: {}", transfers.iter().map(|t| t.name.clone())

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@ -35,10 +35,23 @@ impl ColorPalette {
self.get((2f64.powi(-(t.ilog2() as i32))) * (t as f64 + 0.5f64) - 1.0f64) self.get((2f64.powi(-(t.ilog2() as i32))) * (t as f64 + 0.5f64) - 1.0f64)
} }
pub fn get_uuid(&self, t: uuid::Uuid) -> [f64; 3] { // pub fn get_uuid(&self, t: uuid::Uuid) -> [f64; 3] {
// self.get(t.as_u128() as f64 / (u128::MAX) as f64) // // self.get(t.as_u128() as f64 / (u128::MAX) as f64)
let mut r = SmallRng::seed_from_u64(t.as_u128() as u64); // let mut r = SmallRng::seed_from_u64(t.as_u128() as u64);
self.get(r.gen_range(0.0..1.0f64)) // self.get(r.gen_range(0.0..1.0f64))
// }
pub fn get_ordered(&self, t: uuid::Uuid, ordered_uuids: &Vec<uuid::Uuid>)
-> [f64; 3] {
let index = ordered_uuids.iter().position(|&x| x == t).expect("uuid must be in list of uuids") + 1;
return self.get(Self::space_evenly(index))
}
fn space_evenly(x: usize) -> f64 {
let e: usize = (x.ilog2() + 1) as usize;
let d: usize = (2usize.pow(e as u32)) as usize;
let n: usize = (2*x + 1) % d;
return (n as f64) / (d as f64);
} }
} }

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@ -5,6 +5,8 @@ use uuid::Uuid;
#[derive(PartialEq, Clone, Serialize, Deserialize)] #[derive(PartialEq, Clone, Serialize, Deserialize)]
pub struct PlateInstance { pub struct PlateInstance {
pub plate: Plate, pub plate: Plate,
#[serde(rename = "id_v7")]
#[serde(default = "Uuid::now_v7")]
id: Uuid, id: Uuid,
pub name: String, pub name: String,
} }
@ -16,7 +18,7 @@ impl PlateInstance {
plate_type: sort, plate_type: sort,
plate_format: format, plate_format: format,
}, },
id: Uuid::new_v4(), id: Uuid::now_v7(),
name, name,
} }
} }
@ -34,7 +36,7 @@ impl From<Plate> for PlateInstance {
fn from(value: Plate) -> Self { fn from(value: Plate) -> Self {
PlateInstance { PlateInstance {
plate: value, plate: value,
id: Uuid::new_v4(), id: Uuid::now_v7(),
name: "New Plate".to_string(), name: "New Plate".to_string(),
} }
} }

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@ -10,7 +10,9 @@ pub struct Transfer {
pub source_id: Uuid, pub source_id: Uuid,
pub dest_id: Uuid, pub dest_id: Uuid,
pub name: String, pub name: String,
id: Uuid, #[serde(rename = "id_v7")]
#[serde(default = "Uuid::now_v7")]
pub id: Uuid,
pub transfer_region: TransferRegion, pub transfer_region: TransferRegion,
#[serde(default = "default_volume")] #[serde(default = "default_volume")]
pub volume: f32, pub volume: f32,
@ -44,7 +46,7 @@ impl Transfer {
source_id: source.get_uuid(), source_id: source.get_uuid(),
dest_id: dest.get_uuid(), dest_id: dest.get_uuid(),
name, name,
id: Uuid::new_v4(), id: Uuid::now_v7(),
transfer_region: tr, transfer_region: tr,
volume: 2.5, volume: 2.5,
} }