big eframe moment

perhaps a "Draw the rest of the owl" commit

Cargo.toml

@@ -1,3 +1,3 @@
 [workspace]
-members = ["plate-tool-web", "plate-tool-lib"]
+members = ["plate-tool-web", "plate-tool-lib", "plate-tool-eframe"]
 resolver = "2"

plate-tool-eframe/.cargo/config.toml

@@ -0,0 +1,2 @@
+[build]
+target = "x86_64-unknown-linux-gnu"

plate-tool-eframe/Cargo.toml

@@ -0,0 +1,15 @@
+[package]
+name = "plate-tool-eframe"
+version = "0.1.0"
+edition = "2021"
+
+[dependencies]
+plate-tool-lib = { path = "../plate-tool-lib" }
+eframe = { version = "0.30", default-features = false, features = [
+	"default_fonts",
+	"glow",
+	"wayland",
+]}
+
+log = "0.4"
+env_logger = "0.11"

plate-tool-eframe/src/app.rs

@@ -0,0 +1,220 @@
+use std::ops::DerefMut;
+use std::sync::Mutex;
+
+use eframe::egui::{self};
+
+use plate_tool_lib::plate::PlateFormat;
+use plate_tool_lib::plate_instances;
+
+use crate::plate::{add_grid, PlateUiState};
+use crate::transfer_menu::{self, transfer_menu, CurrentTransferState, TransferMenuState};
+
+#[derive(Default)]
+pub struct MainState {
+    pub source_plates: Vec<plate_tool_lib::plate_instances::PlateInstance>,
+    pub destination_plates: Vec<plate_tool_lib::plate_instances::PlateInstance>,
+    pub transfers: Vec<plate_tool_lib::transfer::Transfer>,
+}
+
+fn construct_fake_mainstate() -> MainState {
+    let src_plate: plate_tool_lib::plate_instances::PlateInstance =
+        plate_instances::PlateInstance::new(
+            plate_tool_lib::plate::PlateType::Source,
+            PlateFormat::W96,
+            "src1".to_owned(),
+        );
+    let dest_plate: plate_tool_lib::plate_instances::PlateInstance =
+        plate_instances::PlateInstance::new(
+            plate_tool_lib::plate::PlateType::Destination,
+            PlateFormat::W96,
+            "dest1".to_owned(),
+        );
+    let well_a1 = plate_tool_lib::Well { row: 1, col: 1 };
+    let well_c3 = plate_tool_lib::Well { row: 3, col: 3 };
+    let well_a5 = plate_tool_lib::Well { row: 1, col: 5 };
+
+    let transfer1_region: plate_tool_lib::transfer_region::TransferRegion =
+        plate_tool_lib::transfer_region::TransferRegion {
+            source_plate: src_plate.plate,
+            source_region: plate_tool_lib::transfer_region::Region::Rect(well_a1, well_c3),
+            dest_plate: dest_plate.plate,
+            dest_region: plate_tool_lib::transfer_region::Region::Point(well_a1),
+            interleave_source: (1, 1),
+            interleave_dest: (1, 1),
+        };
+    let transfer1: plate_tool_lib::transfer::Transfer = plate_tool_lib::transfer::Transfer::new(
+        src_plate.clone(),
+        dest_plate.clone(),
+        transfer1_region,
+        "Shrimp".to_owned(),
+    );
+
+    let transfer2_region: plate_tool_lib::transfer_region::TransferRegion =
+        plate_tool_lib::transfer_region::TransferRegion {
+            source_plate: src_plate.plate,
+            source_region: plate_tool_lib::transfer_region::Region::Rect(well_a1, well_c3),
+            dest_plate: dest_plate.plate,
+            dest_region: plate_tool_lib::transfer_region::Region::Point(well_a5),
+            interleave_source: (1, 1),
+            interleave_dest: (2, 2),
+        };
+    let transfer2: plate_tool_lib::transfer::Transfer = plate_tool_lib::transfer::Transfer::new(
+        src_plate.clone(),
+        dest_plate.clone(),
+        transfer2_region,
+        "Shrimp".to_owned(),
+    );
+
+
+    MainState {
+        source_plates: vec![src_plate],
+        destination_plates: vec![dest_plate],
+        transfers: vec![transfer1, transfer2],
+    }
+}
+
+#[non_exhaustive]
+struct MainWindowState {
+    show_side_panel: bool,
+}
+
+impl Default for MainWindowState {
+    fn default() -> Self {
+        Self {
+            show_side_panel: true,
+        }
+    }
+}
+
+#[non_exhaustive]
+pub struct PlateToolEframe {
+    source_plate_state: Mutex<PlateUiState>,
+    destination_plate_state: Mutex<PlateUiState>,
+    main_window_state: MainWindowState,
+    current_transfer_state: CurrentTransferState,
+    transfer_menu_state: TransferMenuState,
+    transfer_region_cache: plate_tool_lib::transfer_region_cache::TransferRegionCache,
+    main_state: MainState,
+}
+
+impl Default for PlateToolEframe {
+    fn default() -> Self {
+        Self {
+            source_plate_state: Mutex::new(PlateUiState::default()),
+            destination_plate_state: Mutex::new(PlateUiState::default()),
+            main_window_state: MainWindowState::default(),
+            current_transfer_state: CurrentTransferState::default(),
+            transfer_menu_state: TransferMenuState::default(),
+            transfer_region_cache: plate_tool_lib::transfer_region_cache::TransferRegionCache::new(
+            ),
+            main_state: construct_fake_mainstate(),
+        }
+    }
+}
+
+impl PlateToolEframe {
+    pub fn new(cc: &eframe::CreationContext<'_>) -> Self {
+        // Would load state here
+
+        let pte: PlateToolEframe = Default::default();
+        pte.transfer_region_cache.generate_cache(&pte.main_state.transfers);
+
+        pte
+    }
+}
+
+impl eframe::App for PlateToolEframe {
+    // State storage
+    /*
+    fn save(&mut self, storage: &mut dyn eframe::Storage) {
+        unimplemented!()
+    };
+    */
+
+    fn update(&mut self, ctx: &eframe::egui::Context, _frame: &mut eframe::Frame) {
+        let ordered_ids: Vec<plate_tool_lib::uuid::Uuid> = {
+            let mut ids: Vec<plate_tool_lib::uuid::Uuid> = self
+                .main_state
+                .transfers
+                .clone()
+                .iter()
+                .map(|x| x.id)
+                .collect();
+            ids.sort_unstable();
+            ids
+        };
+
+        egui::TopBottomPanel::top("top_panel").show(ctx, |ui| {
+            egui::menu::bar(ui, |ui| {
+                ui.menu_button("File", |ui| {
+                    if ui.button("New").clicked() {}
+                    ui.menu_button("Export", |ui| {
+                        if ui.button("Export as CSV").clicked() {}
+                        if ui.button("Export as JSON").clicked() {}
+                    });
+                    ui.menu_button("Import", |ui| {
+                        if ui.button("Import from JSON").clicked() {}
+                        if ui.button("Import transfer from CSV").clicked() {}
+                    });
+                });
+                ui.menu_button("Options", |ui| {
+                    ui.menu_button("Styles", |ui| {
+                        if ui.button("Toggle transfer hashes").clicked() {}
+                        if ui.button("Toggle volume heatmap").clicked() {}
+                        if ui.button("Toggle current coordinates view").clicked() {}
+                    });
+                    ui.menu_button("Exports", |ui| {
+                        if ui.button("Change CSV export type").clicked() {}
+                    });
+                    ui.menu_button("Windows", |ui| {
+                        ui.toggle_value(
+                            &mut self.main_window_state.show_side_panel,
+                            "Toggle side panel",
+                        );
+                    });
+                });
+            });
+        });
+
+        if self.main_window_state.show_side_panel {
+            egui::SidePanel::left("side_menus").show(ctx, |ui| {
+                ui.vertical(|ui| {
+                    transfer_menu(ui, &self.current_transfer_state, &mut self.transfer_menu_state);
+                });
+            });
+        }
+
+        egui::CentralPanel::default().show(ctx, |ui| {
+            ui.vertical(|ui| {
+                let available_size = ui.available_size();
+                let half_height = {
+                    let mut x = available_size;
+                    x.y /= 2.0;
+                    x
+                };
+                add_grid(
+                    half_height,
+                    PlateFormat::W96,
+                    &self.main_state.transfers,
+                    plate_tool_lib::plate::PlateType::Source,
+                    &ordered_ids,
+                    &self.transfer_region_cache,
+                    Some(&self.current_transfer_state),
+                    ui,
+                    self.source_plate_state.lock().unwrap().deref_mut(),
+                );
+                add_grid(
+                    half_height,
+                    PlateFormat::W96,
+                    &self.main_state.transfers,
+                    plate_tool_lib::plate::PlateType::Destination,
+                    &ordered_ids,
+                    &self.transfer_region_cache,
+                    Some(&self.current_transfer_state),
+                    ui,
+                    self.destination_plate_state.lock().unwrap().deref_mut(),
+                );
+            });
+        });
+    }
+}

plate-tool-eframe/src/lib.rs

@@ -0,0 +1,5 @@
+mod app;
+mod plate;
+mod tree;
+mod transfer_menu;
+pub use app::PlateToolEframe;

plate-tool-eframe/src/main.rs

@@ -0,0 +1,18 @@
+use eframe::*;
+use eframe::egui;
+
+fn main() -> eframe::Result{
+    env_logger::init();
+    log::info!("Shrimp!");
+
+    let native_options = eframe::NativeOptions {
+        viewport: egui::ViewportBuilder::default()
+            .with_title("Shrimp"),
+        ..Default::default()
+    };
+    eframe::run_native(
+        "PlateToolEframe",
+        native_options,
+        Box::new(|cc| Ok(Box::new(plate_tool_eframe::PlateToolEframe::new(cc))))
+    )
+}

plate-tool-eframe/src/plate.rs

@@ -0,0 +1,404 @@
+use eframe::egui::{self, pos2, Color32, Rounding};
+use plate_tool_lib::plate::PlateFormat;
+use plate_tool_lib::transfer_region::Region;
+use plate_tool_lib::uuid::Uuid;
+use plate_tool_lib::Well;
+
+use crate::transfer_menu::CurrentTransferState;
+
+use std::sync::LazyLock;
+
+const PALETTE: plate_tool_lib::util::ColorPalette = plate_tool_lib::util::Palettes::RAINBOW;
+
+// Stroke types
+static STROKE_DEFAULT: LazyLock<egui::Stroke> =
+    LazyLock::new(|| egui::Stroke::new(2.0, egui::Color32::from_gray(128)));
+static STROKE_CURRENT: LazyLock<egui::Stroke> =
+    LazyLock::new(|| egui::Stroke::new(2.0, egui::Color32::from_gray(200)));
+static STROKE_SELECT: LazyLock<egui::Stroke> =
+    LazyLock::new(|| egui::Stroke::new(3.0, egui::Color32::from_gray(200)));
+static STROKE_HOVER: LazyLock<egui::Stroke> =
+    LazyLock::new(|| egui::Stroke::new(3.0, egui::Color32::from_gray(255)));
+
+#[derive(Clone, Debug)]
+pub struct PlateUiState {
+    pub drag_start_position: Option<egui::Pos2>,
+}
+
+impl Default for PlateUiState {
+    fn default() -> Self {
+        Self {
+            drag_start_position: None,
+        }
+    }
+}
+
+#[derive(Clone, Copy, Debug)]
+struct WellInfo {
+    volume: f32,
+    color: [f64; 3],
+}
+
+impl WellInfo {
+    fn new(volume: f32, color: [f64; 3]) -> Self {
+        WellInfo { volume, color }
+    }
+}
+
+fn calculate_grid_params(
+    ul_origin: (f32, f32),
+    tw: f32,
+    th: f32,
+    rows: u8,
+    columns: u8,
+) -> (f32, f32, f32) {
+    // (Start X, Start Y, Radius)
+    const PADDING: f32 = 20.0;
+
+    let usable_width = tw - 2.0 * PADDING;
+    let usable_height = th - 2.0 * PADDING;
+
+    let shared_width = f32::ceil(usable_width / columns as f32);
+    let shared_height = f32::ceil(usable_height / rows as f32);
+    let radius = f32::min(shared_width, shared_height) / 2.0;
+    (ul_origin.0 + PADDING, ul_origin.1 + PADDING, radius)
+}
+
+fn get_hover_well(
+    response: &egui::Response,
+    start_x: f32,
+    start_y: f32,
+    radius: f32,
+) -> Option<(u8, u8)> {
+    get_well_from_pos(response.hover_pos(), start_x, start_y, radius)
+}
+
+fn get_well_from_pos(
+    position: Option<egui::Pos2>,
+    start_x: f32,
+    start_y: f32,
+    radius: f32,
+) -> Option<(u8, u8)> {
+    // Some((row, column))
+    position
+        .map(|p| Into::<(f32, f32)>::into(p))
+        .and_then(|(x, y)| {
+            // Check bounds
+            if x < start_x || y < start_y {
+                return None;
+            }
+            // CHECK Bottom Right BOUND
+
+            let solved_column: u8 = (x - start_x).div_euclid(radius * 2.0) as u8;
+            let solved_row: u8 = (y - start_y).div_euclid(radius * 2.0) as u8;
+
+            Some((solved_row, solved_column))
+        })
+}
+
+fn calculate_shading_for_wells(
+    rows: u8,
+    columns: u8,
+    transfers: &Vec<plate_tool_lib::transfer::Transfer>,
+    plate_type: plate_tool_lib::plate::PlateType,
+    ordered_ids: &[Uuid],
+    cache: &plate_tool_lib::transfer_region_cache::TransferRegionCache,
+) -> Box<[Option<WellInfo>]> {
+    let box_size: usize = rows as usize * columns as usize;
+    let mut well_infos: Box<[Option<WellInfo>]> = vec![None; box_size].into_boxed_slice();
+
+    for transfer in transfers {
+        let cache_result = match plate_type {
+            plate_tool_lib::plate::PlateType::Source => cache.get_source(transfer),
+            plate_tool_lib::plate::PlateType::Destination => cache.get_destination(transfer),
+        };
+        if let Some(wells) = cache_result {
+            for well in wells.iter().filter(|x| x.row <= rows && x.col <= columns) {
+                if let Some(mut x) =
+                    well_infos[well.row as usize * columns as usize + well.col as usize]
+                {
+                    x.volume += 5.0;
+                    x.color = PALETTE.get_ordered(transfer.id, ordered_ids);
+                } else {
+                    well_infos[well.row as usize * columns as usize + well.col as usize] = Some(
+                        WellInfo::new(5.0, PALETTE.get_ordered(transfer.id, ordered_ids)),
+                    );
+                }
+            }
+        }
+    }
+
+    well_infos
+}
+
+fn f64_to_color32(x: [f64; 3]) -> Color32 {
+    let r = x[0] as u8;
+    let g = x[1] as u8;
+    let b = x[2] as u8;
+    Color32::from_rgb(r, g, b)
+}
+
+fn add_grid_sub(
+    size: egui::Vec2,
+    rows: u8,
+    columns: u8,
+    transfers: &Vec<plate_tool_lib::transfer::Transfer>,
+    plate_type: plate_tool_lib::plate::PlateType,
+    ordered_ids: &[Uuid],
+    cache: &plate_tool_lib::transfer_region_cache::TransferRegionCache,
+    current_transfer_state: Option<&CurrentTransferState>,
+    ui: &mut egui::Ui,
+    state: &mut PlateUiState,
+) {
+    let (response, painter) = ui.allocate_painter(size, egui::Sense::click_and_drag());
+
+    let rect = response.rect;
+
+    let ul_origin = rect.left_top();
+    let total_width = rect.width();
+    let total_height = rect.height();
+
+    let (start_x, start_y, radius) =
+        calculate_grid_params(ul_origin.into(), total_width, total_height, rows, columns);
+
+    // Manage clicks and drags
+    if response.drag_started() {
+        state.drag_start_position = Some(response.hover_pos().unwrap());
+    }
+
+    let drag_start_well = get_well_from_pos(state.drag_start_position, start_x, start_y, radius);
+    let hovered_well = get_hover_well(&response, start_x, start_y, radius);
+
+    if response.clicked() {
+        if let Some(cts) = current_transfer_state {
+            let end_well: Option<Well> = hovered_well.map(|(row, col)| Well {
+                row: row + 1,
+                col: col + 1,
+            });
+            if let Some(end_well) = end_well {
+                let new_region = Region::new_from_wells(end_well, None);
+                let mut cts = cts.lock().unwrap();
+                match plate_type {
+                    plate_tool_lib::plate::PlateType::Source => cts.source_region = new_region,
+                    plate_tool_lib::plate::PlateType::Destination => {
+                        cts.destination_region = new_region
+                    }
+                }
+            }
+        }
+    }
+    if response.drag_stopped() {
+        if let Some(cts) = current_transfer_state {
+            let start_well: Well = drag_start_well
+                .map(|(row, col)| Well {
+                    // Lib uses 1-indexing!
+                    row: row + 1,
+                    col: col + 1,
+                })
+                .unwrap();
+            let end_well: Option<Well> = hovered_well.map(|(row, col)| Well {
+                row: row + 1,
+                col: col + 1,
+            });
+            let new_region = Region::new_from_wells(start_well, end_well);
+            let mut cts = cts.lock().unwrap();
+            match plate_type {
+                plate_tool_lib::plate::PlateType::Source => cts.source_region = new_region,
+                plate_tool_lib::plate::PlateType::Destination => {
+                    cts.destination_region = new_region
+                }
+            }
+        }
+        state.drag_start_position = None;
+    }
+
+    let current_selection: Option<Region> = {
+        if let Some(cts) = current_transfer_state {
+            let cts = cts.lock().unwrap();
+            match plate_type {
+                plate_tool_lib::plate::PlateType::Source => Some(cts.source_region.clone()),
+                plate_tool_lib::plate::PlateType::Destination => {
+                    Some(cts.destination_region.clone())
+                }
+            }
+        } else {
+            None
+        }
+    };
+    let well_infos = {
+        let mut well_infos = calculate_shading_for_wells(rows, columns, transfers, plate_type, ordered_ids, cache);
+        // Get wells in the current transfer to tack on to well_infos separately
+        let current_transfer_wells: Option<Box<[(usize,usize)]>> = {
+            (match plate_type {
+                plate_tool_lib::plate::PlateType::Source => current_transfer_state
+                    .and_then(|x| x.lock().ok())
+                    .map(|mut x| x.get_source_wells()),
+                plate_tool_lib::plate::PlateType::Destination => current_transfer_state
+                    .and_then(|x| x.lock().ok())
+                    .map(|mut x| x.get_destination_wells()),
+            })
+                // Drop back to 0-indexing here
+            .map(|xs| xs.iter().map(|x| (x.row as usize - 1, x.col as usize - 1)).collect())
+        };
+        if let Some(wells) = current_transfer_wells {
+            for w in wells {
+                let well_info = &mut well_infos[w.0 * columns as usize + w.1];
+                let volume = well_info.map(|x| x.volume).unwrap_or(0.0)
+                    + current_transfer_state.and_then(|x| x.lock().ok())
+                    .map(|x| x.volume)
+                    .unwrap_or(0.0);
+
+                *well_info = Some(WellInfo {
+                    color: [255.0,255.0,255.0],
+                    volume: 1.0
+                })
+            }
+        }
+        well_infos
+    };
+
+
+    // Plate Frame
+    painter.rect_stroke(
+        egui::Rect {
+            min: pos2(start_x, start_y),
+            max: pos2(
+                start_x + 2.0 * radius * columns as f32,
+                start_y + 2.0 * radius * rows as f32,
+            ),
+        },
+        Rounding::default(),
+        *STROKE_DEFAULT,
+    );
+
+    // Draw wells
+    for c_row in 0..rows {
+        for c_column in 0..columns {
+            let center = egui::pos2(
+                start_x + radius + 2.0 * radius * c_column as f32,
+                start_y + radius + 2.0 * radius * c_row as f32,
+            );
+
+            //
+            // Draw fill first
+            //
+
+            if let Some(well_info) =
+                well_infos[c_row as usize * columns as usize + c_column as usize]
+            {
+                painter.circle_filled(center, radius * 0.80, f64_to_color32(well_info.color));
+            }
+
+            //
+            // Draw stroke on top
+            //
+
+            // Base stroke
+            painter.circle_stroke(center, radius * 0.80, *STROKE_DEFAULT);
+
+            if current_selection.as_ref().is_some_and(|x| {
+                x.contains_well(
+                    &Well {
+                        row: c_row + 1,
+                        col: c_column + 1,
+                    },
+                    None,
+                )
+            }) {
+                painter.circle_stroke(center, radius * 0.80, *STROKE_CURRENT);
+            }
+            if response.dragged() {
+                if let (Some(hw), Some(dw)) = (hovered_well, drag_start_well) {
+                    if c_column <= u8::max(hw.1, dw.1)
+                        && c_column >= u8::min(hw.1, dw.1)
+                        && c_row <= u8::max(hw.0, dw.0)
+                        && c_row >= u8::min(hw.0, dw.0)
+                    {
+                        painter.circle_stroke(center, radius * 0.80, *STROKE_SELECT);
+                    }
+                }
+            }
+            if Some((c_row, c_column)) == hovered_well {
+                painter.circle_stroke(center, radius * 0.80, *STROKE_HOVER);
+            }
+        }
+    }
+
+    // Draw row/column labels
+    for c_row in 0..rows {
+        painter.text(
+            egui::pos2(
+                start_x - 10.0,
+                start_y + radius + 2.0 * radius * c_row as f32,
+            ),
+            egui::Align2::CENTER_CENTER,
+            (c_row + 1).to_string(),
+            egui::FontId::monospace(f32::min(radius, 14.0)),
+            egui::Color32::from_gray(128),
+        );
+    }
+    for c_column in 0..columns {
+        painter.text(
+            egui::pos2(
+                start_x + radius + 2.0 * radius * c_column as f32,
+                start_y - 12.0,
+            ),
+            egui::Align2::CENTER_CENTER,
+            plate_tool_lib::util::num_to_letters(c_column + 1).unwrap(),
+            egui::FontId::monospace(f32::min(radius, 14.0)),
+            egui::Color32::from_gray(128),
+        );
+    }
+}
+
+pub fn add_grid(
+    size: egui::Vec2,
+    pf: PlateFormat,
+    transfers: &Vec<plate_tool_lib::transfer::Transfer>,
+    plate_type: plate_tool_lib::plate::PlateType,
+    ordered_ids: &[Uuid],
+    cache: &plate_tool_lib::transfer_region_cache::TransferRegionCache,
+    current_transfer_state: Option<&CurrentTransferState>,
+    ui: &mut egui::Ui,
+    state: &mut PlateUiState,
+) {
+    match pf {
+        PlateFormat::W96 => add_grid_sub(
+            size,
+            8,
+            12,
+            transfers,
+            plate_type,
+            ordered_ids,
+            cache,
+            current_transfer_state,
+            ui,
+            state,
+        ),
+        PlateFormat::W384 => add_grid_sub(
+            size,
+            16,
+            24,
+            transfers,
+            plate_type,
+            ordered_ids,
+            cache,
+            current_transfer_state,
+            ui,
+            state,
+        ),
+        PlateFormat::W1536 => add_grid_sub(
+            size,
+            32,
+            48,
+            transfers,
+            plate_type,
+            ordered_ids,
+            cache,
+            current_transfer_state,
+            ui,
+            state,
+        ),
+        _ => unimplemented!(),
+    }
+}

plate-tool-eframe/src/transfer_menu.rs

@@ -0,0 +1,223 @@
+use eframe::egui;
+use plate_tool_lib::transfer_region::{Region, TransferRegion};
+use std::sync::{Arc, Mutex};
+use std::hash::{DefaultHasher, Hash, Hasher};
+
+pub type CurrentTransferState = Arc<Mutex<CurrentTransferStateInterior>>;
+pub struct CurrentTransferStateInterior {
+    pub transfer_name: String,
+    pub source_region: plate_tool_lib::transfer_region::Region,
+    pub destination_region: plate_tool_lib::transfer_region::Region,
+    pub source_plate: plate_tool_lib::plate::Plate,
+    pub destination_plate: plate_tool_lib::plate::Plate,
+    pub source_row_interleave: i8,
+    pub source_column_interleave: i8,
+    pub destination_row_interleave: i8,
+    pub destination_column_interleave: i8,
+    pub volume: f32,
+    transfer_hash: Option<u64>,
+    source_wells: Option<Vec<plate_tool_lib::Well>>,
+    destination_wells: Option<Vec<plate_tool_lib::Well>>,
+}
+impl Default for CurrentTransferStateInterior {
+    fn default() -> Self {
+        Self {
+            transfer_name: String::default(),
+            source_region: plate_tool_lib::transfer_region::Region::Point(plate_tool_lib::Well {
+                row: 1,
+                col: 1,
+            }),
+            destination_region: plate_tool_lib::transfer_region::Region::Point(
+                plate_tool_lib::Well { row: 1, col: 1 },
+            ),
+            source_plate: plate_tool_lib::plate::SOURCE_W96,
+            destination_plate: plate_tool_lib::plate::DESTINATION_W96,
+            source_row_interleave: 1,
+            source_column_interleave: 1,
+            destination_row_interleave: 1,
+            destination_column_interleave: 1,
+            volume: 5.0,
+            transfer_hash: None,
+            source_wells: None,
+            destination_wells: None,
+        }
+    }
+}
+impl CurrentTransferStateInterior {
+    pub fn get_source_wells(&mut self) -> Box<[plate_tool_lib::Well]> {
+        if self.source_wells.is_none() {
+            self.recalulate_wells();
+        }
+        self.recalculate_wells_if_needed();
+        self.source_wells
+            .clone()
+            .expect("Source wells must have been calculated by here.")
+            .into_boxed_slice()
+    }
+    pub fn get_destination_wells(&mut self) -> Box<[plate_tool_lib::Well]> {
+        if self.destination_wells.is_none() {
+            self.recalulate_wells();
+        }
+        self.recalculate_wells_if_needed();
+        self.destination_wells
+            .clone()
+            .expect("Destination wells must have been calculated by here.")
+            .into_boxed_slice()
+    }
+
+    fn recalculate_wells_if_needed(&mut self) {
+        if self.transfer_hash.is_none() {
+            self.recalulate_wells();
+        }
+        if self.transfer_hash.unwrap() != self.calculate_hash() {
+            self.recalulate_wells();
+        }
+    }
+    fn recalulate_wells(&mut self) {
+        let tr = self.generate_transfer_region();
+
+        self.source_wells = Some(tr.get_source_wells());
+        self.destination_wells = Some(tr.get_destination_wells());
+        self.transfer_hash = Some(self.calculate_hash());
+    }
+    fn calculate_hash(&self) -> u64 {
+        let mut hasher = DefaultHasher::new();
+        self.generate_transfer_region().hash(&mut hasher);
+        hasher.finish()
+    }
+
+    fn generate_transfer_region(&self) -> TransferRegion {
+        TransferRegion {
+            source_plate: self.source_plate,
+            source_region: self.source_region.clone(),
+            dest_plate: self.destination_plate,
+            dest_region: self.destination_region.clone(),
+            interleave_source: (self.source_row_interleave, self.source_column_interleave),
+            interleave_dest: (self.destination_row_interleave, self.destination_column_interleave),
+        }
+    }
+}
+
+pub struct TransferMenuState {
+    pub source_region_string: String,
+    pub destination_region_string: String,
+}
+
+impl Default for TransferMenuState {
+    fn default() -> Self {
+        TransferMenuState {
+            source_region_string: String::new(),
+            destination_region_string: String::new(),
+        }
+    }
+}
+impl TransferMenuState {
+    fn new_from_cts(cts: &CurrentTransferState) -> Self {
+        let cts = cts.lock().unwrap();
+        let source_region_string = cts.source_region.to_string();
+        let destination_region_string = cts.destination_region.to_string();
+        TransferMenuState {
+            source_region_string,
+            destination_region_string,
+        }
+    }
+}
+
+pub fn transfer_menu(
+    ui: &mut egui::Ui,
+    state: &CurrentTransferState,
+    ui_state: &mut TransferMenuState,
+) {
+    // Can we reduce the length of this lock pls
+    let mut state = state.lock().unwrap();
+
+    ui.horizontal(|ui| {
+        ui.add(egui::Label::new("Name"));
+        ui.add(
+            egui::TextEdit::singleline(&mut state.transfer_name)
+                .hint_text("Transfer Name")
+                .horizontal_align(egui::Align::Center),
+        );
+    });
+
+    ui.horizontal(|ui| {
+        ui.add(egui::Label::new("Source Region"));
+        let resp = ui.add(
+            egui::TextEdit::singleline(&mut ui_state.source_region_string)
+                .hint_text("Source Region")
+                .char_limit(9)
+                .horizontal_align(egui::Align::Center),
+        );
+        if resp.lost_focus() && ui.input(|i| i.key_pressed(egui::Key::Enter)) {
+            if let Some(new_region) = Region::try_parse_str(&ui_state.source_region_string) {
+                state.source_region = new_region;
+            } else {
+                log::warn!("Invalid source region entered.")
+            }
+        }
+        if !resp.has_focus() && !resp.lost_focus() {
+            ui_state.source_region_string = state.source_region.to_string();
+        }
+    });
+    ui.end_row();
+
+    ui.horizontal(|ui| {
+        ui.add(egui::Label::new("Destination Region"));
+        let resp = ui.add(
+            egui::TextEdit::singleline(&mut ui_state.destination_region_string)
+                .hint_text("Destination Region")
+                .char_limit(9)
+                .horizontal_align(egui::Align::Center),
+        );
+        if resp.lost_focus() && ui.input(|i| i.key_pressed(egui::Key::Enter)) {
+            if let Some(new_region) = Region::try_parse_str(&ui_state.destination_region_string) {
+                state.destination_region = new_region;
+            } else {
+                log::warn!("Invalid destination region entered.")
+            }
+        }
+        if !resp.has_focus() {
+            ui_state.destination_region_string = state.destination_region.to_string();
+        }
+    });
+
+    ui.vertical(|ui| {
+        ui.label("Source Interleave");
+        ui.horizontal(|ui| {
+            ui.label("Row: ");
+            ui.add(
+                egui::DragValue::new(&mut state.source_row_interleave)
+                    .fixed_decimals(0)
+                    .range(1..=30)
+                    .speed(0.1),
+            );
+            ui.label("Col: ");
+            ui.add(
+                egui::DragValue::new(&mut state.source_column_interleave)
+                    .fixed_decimals(0)
+                    .range(1..=30)
+                    .speed(0.1),
+            );
+        });
+    });
+
+    ui.vertical(|ui| {
+        ui.label("Destination Interleave");
+        ui.horizontal(|ui| {
+            ui.label("Row: ");
+            ui.add(
+                egui::DragValue::new(&mut state.destination_row_interleave)
+                    .fixed_decimals(0)
+                    .range(0..=30)
+                    .speed(0.1),
+            );
+            ui.label("Col: ");
+            ui.add(
+                egui::DragValue::new(&mut state.destination_column_interleave)
+                    .fixed_decimals(0)
+                    .range(0..=30)
+                    .speed(0.1),
+            );
+        });
+    });
+}

plate-tool-lib/src/lib.rs

@@ -3,8 +3,11 @@ pub mod plate;
 pub mod plate_instances;
 pub mod transfer;
 pub mod transfer_region;
+pub mod transfer_region_cache;
 pub mod transfer_volume;
 pub mod util;
 
 mod well;
 pub use well::Well;
+
+pub use uuid;

plate-tool-lib/src/plate.rs

@@ -1,6 +1,15 @@
 use serde::{Deserialize, Serialize};
 
-#[derive(PartialEq, Eq, Default, Clone, Copy, Serialize, Deserialize, Debug)]
+pub const SOURCE_W96: Plate = Plate {
+    plate_type: PlateType::Source,
+    plate_format: PlateFormat::W96,
+};
+pub const DESTINATION_W96: Plate = Plate {
+    plate_type: PlateType::Destination,
+    plate_format: PlateFormat::W96,
+};
+
+#[derive(PartialEq, Eq, Default, Clone, Copy, Serialize, Deserialize, Debug, Hash)]
 pub struct Plate {
     pub plate_type: PlateType,
     pub plate_format: PlateFormat,
@@ -19,7 +28,7 @@ impl Plate {
     }
 }
 
-#[derive(PartialEq, Eq, Clone, Copy, Serialize, Deserialize, Debug)]
+#[derive(PartialEq, Eq, Clone, Copy, Serialize, Deserialize, Debug, Hash)]
 pub enum PlateType {
     Source,
     Destination,
@@ -30,7 +39,7 @@ impl Default for PlateType {
     }
 }
 
-#[derive(PartialEq, Eq, Clone, Copy, Serialize, Deserialize, Debug)]
+#[derive(PartialEq, Eq, Clone, Copy, Serialize, Deserialize, Debug, Hash)]
 pub enum PlateFormat {
     W6,
     W12,

plate-tool-lib/src/transfer_region.rs

@@ -1,9 +1,16 @@
 use serde::{Deserialize, Serialize};
 
+use regex::Regex;
+
 use super::plate::Plate;
+use crate::plate::PlateType;
+use crate::util;
 use crate::Well;
 
-#[derive(Clone, PartialEq, Eq, Serialize, Deserialize, Debug)]
+use std::fmt;
+use std::sync::LazyLock;
+
+#[derive(Clone, PartialEq, Eq, Serialize, Deserialize, Debug, Hash)]
 pub struct CustomRegion {
     src: Vec<Well>,
     dest: Vec<Well>,
@@ -15,7 +22,7 @@ impl CustomRegion {
     }
 }
 
-#[derive(Clone, PartialEq, Eq, Serialize, Deserialize, Debug)]
+#[derive(Clone, PartialEq, Eq, Serialize, Deserialize, Debug, Hash)]
 pub enum Region {
     Rect(Well, Well),
     Point(Well),
@@ -26,6 +33,28 @@ impl Default for Region {
         Region::Point(Well { row: 1, col: 1 })
     }
 }
+impl Display for Region {
+    fn fmt(&self, f: &mut fmt::Formatter<'_>) -> fmt::Result {
+        match self {
+            Region::Rect(ul, br) => {
+                write!(
+                    f,
+                    "{}{}:{}{}",
+                    util::num_to_letters(ul.col).unwrap(),
+                    ul.row,
+                    util::num_to_letters(br.col).unwrap(),
+                    br.row
+                )
+            }
+            Region::Point(w) => {
+                write!(f, "{}{}", util::num_to_letters(w.col).unwrap(), w.row)
+            }
+            Region::Custom(..) => {
+                write!(f, "Custom Region")
+            }
+        }
+    }
+}
 impl TryFrom<Region> for (Well, Well) {
     type Error = &'static str;
     fn try_from(region: Region) -> Result<Self, Self::Error> {
@@ -53,9 +82,76 @@ impl Region {
             dest: dest_pts,
         })
     }
+
+    pub fn new_from_wells(w1: Well, w2: Option<Well>) -> Self {
+        if w2.is_none() {
+            Self::Point(w1)
+        } else {
+            let w2 = w2.unwrap();
+            let (w1, w2) = standardize_rectangle(&w1, &w2);
+            Self::Rect(w1, w2)
+        }
+    }
+
+    pub fn try_parse_str(input: &str) -> Option<Self> {
+        static POINT_REGEX: LazyLock<Regex> =
+            LazyLock::new(|| Regex::new(r"([A-Z,a-z]+)(\d+)").unwrap());
+        static RECT_REGEX: LazyLock<Regex> =
+            LazyLock::new(|| Regex::new(r"([A-Z,a-z]+)(\d+):([A-Z,a-z]+)(\d+)").unwrap());
+
+        log::info!("{:?}", input);
+        if let Some(captures) = RECT_REGEX.captures(input) {
+            if let (Some(row1), Some(col1), Some(row2), Some(col2)) = (
+                crate::util::letters_to_num(&captures[1]),
+                captures[2].parse::<u8>().ok(),
+                crate::util::letters_to_num(&captures[3]),
+                captures[4].parse::<u8>().ok(),
+            ) {
+                return Some(Region::Rect(
+                    Well {
+                        row: row1,
+                        col: col1,
+                    },
+                    Well {
+                        row: row2,
+                        col: col2,
+                    },
+                ));
+            } else {
+                return None;
+            }
+        } else if let Some(captures) = POINT_REGEX.captures(input) {
+            if let (Some(row), Some(col)) = (
+                crate::util::letters_to_num(&captures[1]),
+                captures[2].parse::<u8>().ok(),
+            ) {
+                return Some(Region::Point(Well { row, col }));
+            } else {
+                return None;
+            }
+        } else {
+            None
+        }
+    }
+
+    pub fn contains_well(&self, w: &Well, pt: Option<PlateType>) -> bool {
+        match self {
+            Self::Point(x) => x == w,
+            Self::Rect(ul, br) => {
+                w.row <= br.row && w.row >= ul.row && w.col <= br.col && w.col >= ul.col
+            }
+            Self::Custom(xs) => match pt {
+                Some(PlateType::Source) => xs.src.contains(w),
+                Some(PlateType::Destination) => xs.dest.contains(w),
+                None => {
+                    unreachable!("Cannot check if custom contains well without knowing the type")
+                }
+            },
+        }
+    }
 }
 
-#[derive(PartialEq, Eq, Clone, Serialize, Deserialize, Debug)]
+#[derive(PartialEq, Eq, Clone, Serialize, Deserialize, Debug, Hash)]
 pub struct TransferRegion {
     pub source_plate: Plate,
     pub source_region: Region, // Even if it is just a point, we don't want corners.
@@ -233,8 +329,10 @@ impl TransferRegion {
                         let j = j
                             .saturating_sub(s_ul.col)
                             .saturating_div(il_source.1.unsigned_abs());
-                        let checked_il_dest = (u8::max(il_dest.0.unsigned_abs(), 1u8),
+                        let checked_il_dest = (
-                                                u8::max(il_dest.1.unsigned_abs(), 1u8));
+                            u8::max(il_dest.0.unsigned_abs(), 1u8),
+                            u8::max(il_dest.1.unsigned_abs(), 1u8),
+                        );
                         let row_modulus = number_used_src_wells.0 * checked_il_dest.0;
                         let column_modulus = number_used_src_wells.1 * checked_il_dest.1;
 
@@ -256,12 +354,12 @@ impl TransferRegion {
                                 .filter(|Well { row: x, col: y }| {
                                     // How many times have we replicated? < How many are we allowed
                                     // to replicate?
-                                    x.checked_sub(d_ul.row).unwrap().div_euclid(
+                                    x.checked_sub(d_ul.row).unwrap().div_euclid(row_modulus)
-                                        row_modulus
+                                        < count.0
-                                    ) < count.0
+                                        && y.checked_sub(d_ul.col)
-                                        && y.checked_sub(d_ul.col).unwrap().div_euclid(
+                                            .unwrap()
-                                            column_modulus
+                                            .div_euclid(column_modulus)
-                                        ) < count.1
+                                            < count.1
                                 })
                                 .collect(),
                         )
@@ -319,8 +417,8 @@ impl TransferRegion {
                     return Err("Source region is out-of-bounds! (Too wide)");
                 }
 
-                if il_dest == (0,0) {
+                if il_dest == (0, 0) {
-                    return Err("Refusing to pool both dimensions in a rectangular transfer!\nPlease select a point in the destination plate.")
+                    return Err("Refusing to pool both dimensions in a rectangular transfer!\nPlease select a point in the destination plate.");
                 }
             }
             Region::Custom(_) => return Ok(()),
@@ -372,7 +470,7 @@ fn standardize_rectangle(c1: &Well, c2: &Well) -> (Well, Well) {
 
 #[cfg(debug_assertions)]
 use std::fmt;
-use std::ops::Mul;
+use std::{fmt::Display, ops::Mul};
 
 #[cfg(debug_assertions)] // There should be no reason to print a transfer otherwise
 impl fmt::Display for TransferRegion {

plate-tool-lib/src/transfer_region_cache.rs

@@ -0,0 +1,95 @@
+use std::collections::HashMap;
+use std::sync::{Arc, Mutex};
+
+use crate::transfer::Transfer;
+use crate::Well;
+
+use uuid::Uuid;
+
+#[derive(Debug)]
+pub struct TransferRegionCache {
+    interior: Arc<Mutex<TransferRegionCacheInterior>>,
+}
+
+impl TransferRegionCache {
+    pub fn new() -> Self {
+        TransferRegionCache {
+            interior: Arc::new(Mutex::new(TransferRegionCacheInterior::new()))
+        }
+    }
+
+    pub fn add_overwrite(&self, tr: &Transfer) {
+        let source = tr.transfer_region.get_source_wells();
+        let destination = tr.transfer_region.get_destination_wells();
+        let uuid = tr.id;
+
+        if let Ok(mut interior) = self.interior.lock() {
+            interior.cache.insert(uuid, InteriorWellSlices {
+                source: source.into(),
+                destination: destination.into(),
+            });
+        }
+    }
+
+    pub fn generate_cache(&self, trs: &[Transfer]) {
+        for tr in trs.iter() {
+            self.add_overwrite(tr);
+        }
+    }
+
+    pub fn invalidate(&self, tr: &Transfer) {
+        if let Ok(mut interior) = self.interior.lock() {
+            interior.cache.remove(&tr.id);
+        }
+    }
+
+    pub fn get_source(&self, tr: &Transfer) -> Option<Arc<[Well]>> {
+        self.get(tr, true)
+    }
+
+    pub fn get_destination(&self, tr: &Transfer) -> Option<Arc<[Well]>> {
+        self.get(tr, false)
+    }
+
+    fn get(&self, tr: &Transfer, is_source: bool) -> Option<Arc<[Well]>> {
+        if let Ok(interior) = self.interior.lock() {
+            interior.cache.get(&tr.id).map(|x| 
+                if is_source {
+                    x.source.clone()
+                } else {
+                    x.destination.clone()
+                })
+        } else {
+            None
+        }
+    }
+}
+
+impl Clone for TransferRegionCache {
+    fn clone(&self) -> Self {
+        // Clone the interior RC without letting anyone know
+        // shhhh!
+        TransferRegionCache {
+            interior: self.interior.clone(),
+        }
+    }
+}
+
+#[derive(Debug)]
+struct TransferRegionCacheInterior {
+    cache: HashMap<Uuid, InteriorWellSlices>,
+}
+
+impl TransferRegionCacheInterior {
+    fn new() -> Self {
+        TransferRegionCacheInterior {
+            cache: HashMap::new()
+        }
+    }
+}
+
+#[derive(Debug)]
+struct InteriorWellSlices {
+    source: Arc<[Well]>,
+    destination: Arc<[Well]>,
+}

plate-tool-lib/src/util.rs

@@ -30,6 +30,89 @@ pub fn num_to_letters(num: u8) -> Option<String> {
     Some(text.to_string())
 }
 
+//
+// Palettes moved from pt-web
+//
+
+// Sources:
+// https://iquilezles.org/articles/palettes/
+// http://dev.thi.ng/gradients/
+
+#[derive(Clone, Copy, PartialEq, Debug)]
+pub struct ColorPalette {
+    a: [f64; 3],
+    b: [f64; 3],
+    c: [f64; 3],
+    d: [f64; 3],
+}
+
+impl ColorPalette {
+    pub fn _new(a: [f64; 3], b: [f64; 3], c: [f64; 3], d: [f64; 3]) -> Self {
+        ColorPalette { a, b, c, d }
+    }
+
+    pub fn get(&self, t: f64) -> [f64; 3] {
+        [
+            (self.a[0] + self.b[0] * f64::cos(std::f64::consts::TAU * (self.c[0] * t + self.d[0])))
+                * 255.0,
+            (self.a[1] + self.b[1] * f64::cos(std::f64::consts::TAU * (self.c[1] * t + self.d[1])))
+                * 255.0,
+            (self.a[2] + self.b[2] * f64::cos(std::f64::consts::TAU * (self.c[2] * t + self.d[2])))
+                * 255.0,
+        ]
+    }
+
+    #[allow(dead_code)] // Preserve old implementation for reference
+    fn get_u8(&self, t: u8) -> [f64; 3] {
+        assert!(t > 0, "t must be greater than zero!");
+        self.get((2f64.powi(-(t.ilog2() as i32))) * (t as f64 + 0.5f64) - 1.0f64)
+    }
+
+    // pub fn get_uuid(&self, t: uuid::Uuid) -> [f64; 3] {
+    //     // self.get(t.as_u128() as f64 / (u128::MAX) as f64)
+    //     let mut r = SmallRng::seed_from_u64(t.as_u128() as u64);
+    //     self.get(r.gen_range(0.0..1.0f64))
+    // }
+
+    pub fn get_ordered(&self, t: uuid::Uuid, ordered_uuids: &[uuid::Uuid])
+        -> [f64; 3] {
+        let index = ordered_uuids.iter().position(|&x| x == t).expect("uuid must be in list of uuids") + 1;
+        self.get(Self::space_evenly(index))
+    }
+
+    pub fn get_linear(&self, t: f64, max: f64) -> [f64; 3] {
+        let scaled = t / max;
+        self.get(scaled)
+    }
+
+    fn space_evenly(x: usize) -> f64 {
+        let e: usize = (x.ilog2() + 1) as usize;
+        let d: usize = 2usize.pow(e as u32);
+        let n: usize = (2*x + 1) % d;
+        (n as f64) / (d as f64)
+    }
+}
+
+#[non_exhaustive]
+pub struct Palettes;
+
+#[allow(dead_code)]
+impl Palettes {
+    pub const RAINBOW: ColorPalette = ColorPalette {
+        a: [0.500, 0.500, 0.500],
+        b: [0.700, 0.700, 0.700],
+        c: [0.800, 0.800, 0.800],
+        d: [0.000, 0.333, 0.667],
+    };
+    pub const YELLOW_PINK: ColorPalette = ColorPalette {
+        a: [0.500, 0.500, 0.320],
+        b: [0.500, 0.500, 0.500],
+        c: [0.100, 0.500, 0.360],
+        d: [0.000, 0.000, 0.650],
+    };
+
+}
+
 #[cfg(test)]
 mod tests {
     use super::{letters_to_num, num_to_letters};