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54 changed files with 770 additions and 1136 deletions

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Cargo.lock generated
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"windows_x86_64_msvc",
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name = "yew" name = "yew"
version = "0.20.0" version = "0.20.0"
@ -1186,9 +1145,9 @@ dependencies = [
[[package]] [[package]]
name = "yewdux" name = "yewdux"
version = "0.9.3" version = "0.9.2"
source = "registry+https://github.com/rust-lang/crates.io-index" source = "registry+https://github.com/rust-lang/crates.io-index"
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View File

@ -1,3 +1,29 @@
[workspace] [package]
members = ["plate-tool-web", "plate-tool-lib"] name = "plate-tool"
resolver = "2" version = "0.2.0"
edition = "2021"
# See more keys and their definitions at https://doc.rust-lang.org/cargo/reference/manifest.html
[dependencies]
yew = { version = "0.20.0", features = ["csr"] }
yewdux = "0.9"
wasm-bindgen = "0.2"
web-sys = { version = "0.3", features = ["FormData", "HtmlFormElement",
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js-sys = "0.3"
log = "0.4"
wasm-logger = "0.2"
regex = "1"
lazy_static = "1.4"
uuid = { version = "1.6", features = ["v7", "fast-rng", "macro-diagnostics", "js", "serde"] }
serde = { version = "1.0", features = ["derive"] }
serde_json = "1.0"
csv = "1.2"
getrandom = { version = "0.2", features = ["js"] }
rand = { version = "0.8", features = ["small_rng"] }
[dev-dependencies]
wasm-bindgen-test = "0.3.0"

View File

@ -0,0 +1,18 @@
@use "sass:color";
@use "../variables" as *;
div.plate_container {
display: flex;
flex-direction: column;
justify-content: space-evenly;
align-items: center;
border: 2px solid $color-dark;
grid-column: right / right;
grid-row: upper / 3;
h2 {
margin-bottom: 1%;
text-align: center;
}
}

View File

@ -1,2 +0,0 @@
/target
/dist

View File

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# It is not intended for manual editing.
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View File

@ -1,16 +0,0 @@
[package]
name = "plate-tool-lib"
version = "0.1.0"
edition = "2021"
# See more keys and their definitions at https://doc.rust-lang.org/cargo/reference/manifest.html
[dependencies]
log = "0.4"
regex = "1"
uuid = { version = "1.6", features = ["v7", "fast-rng", "macro-diagnostics", "js", "serde"] }
serde = { version = "1.0", features = ["derive"] }
serde_json = "1.0"
csv = "1.2"
getrandom = { version = "0.2", features = ["js"] }
rand = { version = "0.8", features = ["small_rng"] }

View File

@ -1,70 +0,0 @@
pub fn letters_to_num(letters: &str) -> Option<u8> {
let mut num: u8 = 0;
for (i, letter) in letters.to_ascii_uppercase().chars().rev().enumerate() {
log::debug!("{}, {}", i, letter);
let n = letter as u8;
if !(65..=90).contains(&n) {
return None;
}
num = num.checked_add((26_i32.pow(i as u32) * (n as i32 - 64)).try_into().ok()?)?;
}
Some(num)
}
pub fn num_to_letters(num: u8) -> Option<String> {
if num == 0 {
return None;
} // Otherwise, we will not return none!
// As another note, we can't represent higher than "IV" anyway;
// thus there's no reason for a loop (26^n with n>1 will NOT occur).
let mut text = "".to_string();
let mut digit1 = num.div_euclid(26u8);
let mut digit2 = num.rem_euclid(26u8);
if digit1 > 0 && digit2 == 0u8 {
digit1 -= 1;
digit2 = 26;
}
if digit1 != 0 {
text.push((64 + digit1) as char)
}
text.push((64 + digit2) as char);
Some(text.to_string())
}
#[cfg(test)]
mod tests {
use super::{letters_to_num, num_to_letters, RegionDisplay};
#[test]
fn test_letters_to_num() {
assert_eq!(letters_to_num("D"), Some(4));
assert_eq!(letters_to_num("d"), None);
assert_eq!(letters_to_num("AD"), Some(26 + 4));
assert_eq!(letters_to_num("CG"), Some(3 * 26 + 7));
}
#[test]
fn test_num_to_letters() {
println!("27 is {:?}", num_to_letters(27));
assert_eq!(num_to_letters(1), Some("A".to_string()));
assert_eq!(num_to_letters(26), Some("Z".to_string()));
assert_eq!(num_to_letters(27), Some("AA".to_string()));
assert_eq!(num_to_letters(111), Some("DG".to_string()));
}
#[test]
fn test_l2n_and_n2l() {
assert_eq!(
num_to_letters(letters_to_num("A").unwrap()),
Some("A".to_string())
);
assert_eq!(
num_to_letters(letters_to_num("BJ").unwrap()),
Some("BJ".to_string())
);
for i in 1..=255 {
assert_eq!(letters_to_num(&num_to_letters(i).unwrap()), Some(i));
}
}
}

View File

@ -1,2 +0,0 @@
/target
/dist

View File

@ -1,30 +0,0 @@
[package]
name = "plate-tool-web"
version = "0.2.0"
edition = "2021"
# See more keys and their definitions at https://doc.rust-lang.org/cargo/reference/manifest.html
[dependencies]
plate-tool-lib = { path = "../plate-tool-lib" }
yew = { version = "0.20.0", features = ["csr"] }
yewdux = "0.9"
wasm-bindgen = "0.2"
web-sys = { version = "0.3", features = ["FormData", "HtmlFormElement",
"HtmlDialogElement", "Blob", "Url", "Window",
"HtmlAnchorElement", "ReadableStream", "HtmlSelectElement", "HtmlOptionElement", "HtmlButtonElement",
"FileReader", "HtmlCollection"] }
js-sys = "0.3"
log = "0.4"
wasm-logger = "0.2"
regex = "1"
lazy_static = "1.4"
uuid = { version = "1.6", features = ["v7", "fast-rng", "macro-diagnostics", "js", "serde"] }
serde = { version = "1.0", features = ["derive"] }
serde_json = "1.0"
csv = "1.2"
getrandom = { version = "0.2", features = ["js"] }
rand = { version = "0.8", features = ["small_rng"] }
[dev-dependencies]
wasm-bindgen-test = "0.3.0"

View File

@ -1,41 +0,0 @@
@use "sass:color";
@use "../variables" as *;
div.plate_container {
display: flex;
flex-direction: column;
justify-content: space-evenly;
align-items: center;
border: 2px solid $color-dark;
grid-column: right / right;
grid-row: upper / 3;
h2 {
margin-bottom: 1%;
text-align: center;
}
&>div {
display: grid;
grid-template-rows: auto auto;
grid-template-rows: auto auto;
&>h2:nth-of-type(1) {
grid-column: 2;
grid-row: 1;
}
&>h2:nth-of-type(2) {
grid-column: 1;
grid-row: 2;
writing-mode: vertical-rl;
transform: rotate(-180deg);
}
&>div {
grid-column:2;
grid-row: 2;
}
}
}

View File

@ -1,5 +0,0 @@
pub mod plate_container;
mod util;
mod plate_callbacks;
mod plate_data;
mod plate;

View File

@ -1,50 +0,0 @@
use yew::prelude::*;
use yewdux::prelude::*;
use crate::components::states::CurrentTransfer;
use plate_tool_lib::transfer_region::Region;
// Color Palette for the Source Plates, can be changed here
use super::super::transfer_menu::RegionDisplay;
use super::plate_data::*;
pub fn mouse_callback(
m_start_handle: MStartHandle,
m_end_handle: MEndHandle,
m_stat_handle: MStatHandle,
) -> Callback<(u8, u8, MouseEventType)> {
Callback::from(move |(i, j, t)| match t {
MouseEventType::Mousedown => {
m_start_handle.set(Some((i, j)));
m_end_handle.set(Some((i, j)));
m_stat_handle.set(true);
}
MouseEventType::Mouseenter => {
if *m_stat_handle {
m_end_handle.set(Some((i, j)));
}
}
})
}
pub fn mouseup_callback(
m_start_handle: MStartHandle,
m_end_handle: MEndHandle,
m_stat_handle: MStatHandle,
ct_dispatch: Dispatch<CurrentTransfer>,
) -> Callback<MouseEvent> {
Callback::from(move |_: MouseEvent| {
m_stat_handle.set(false);
if let Some(ul) = *m_start_handle {
if let Some(br) = *m_end_handle {
if let Ok(rd) = RegionDisplay::try_from((ul.0, ul.1, br.0, br.1)) {
ct_dispatch.reduce_mut(|state| {
state.transfer.transfer_region.source_region = Region::from(&rd);
});
}
}
}
})
}

View File

@ -1,23 +0,0 @@
use yew::prelude::*;
use plate_tool_lib::plate_instances::PlateInstance;
use plate_tool_lib::plate::PlateType;
#[derive(PartialEq, Properties)]
pub struct PlateProps {
pub source_plate: PlateInstance,
pub destination_plate: PlateInstance,
pub cell_height: f64,
pub ptype: PlateType,
}
pub type MStartHandle = UseStateHandle<Option<(u8, u8)>>;
pub type MEndHandle = UseStateHandle<Option<(u8, u8)>>;
pub type MStatHandle = UseStateHandle<bool>;
#[derive(Debug)]
pub enum MouseEventType {
Mousedown,
Mouseenter,
}

View File

@ -1,25 +1,29 @@
use std::collections::HashSet; use std::collections::HashSet;
use std::str::FromStr;
use js_sys::Array;
use lazy_static::lazy_static; use lazy_static::lazy_static;
use regex::Regex; use regex::Regex;
use wasm_bindgen::{prelude::*, JsCast}; use wasm_bindgen::{prelude::*, JsCast, JsValue};
use web_sys::{ use web_sys::{
FileReader, HtmlButtonElement, HtmlDialogElement, HtmlFormElement, HtmlInputElement, Blob, FileReader, HtmlAnchorElement, HtmlButtonElement, HtmlDialogElement, HtmlElement,
HtmlOptionElement, HtmlSelectElement, HtmlFormElement, HtmlInputElement, HtmlOptionElement, HtmlSelectElement, Url,
}; };
use yew::prelude::*; use yew::prelude::*;
use yewdux::prelude::*; use yewdux::prelude::*;
use crate::components::states::MainState; use crate::components::states::{CurrentTransfer, MainState};
use plate_tool_lib::util::letters_to_num; use crate::components::transfer_menu::letters_to_num;
use plate_tool_lib::transfer::Transfer; use crate::data::transfer::Transfer;
use plate_tool_lib::transfer_region::{Region, TransferRegion}; use crate::data::transfer_region::{Region, TransferRegion};
use plate_tool_lib::csv::TransferRecord; use crate::data::csv::{state_to_csv, TransferRecord};
use super::main_window_callbacks::create_close_button; use super::main_window_callbacks::create_close_button;
type NoParamsCallback = Box<dyn Fn(()) -> ()>;
pub fn import_transfer_csv_input_callback( pub fn import_transfer_csv_input_callback(
main_dispatch: Dispatch<MainState>, main_dispatch: Dispatch<MainState>,
modal: HtmlDialogElement, modal: HtmlDialogElement,
@ -104,7 +108,22 @@ pub fn import_transfer_csv_onload_callback(
) -> Closure<dyn FnMut(Event)> { ) -> Closure<dyn FnMut(Event)> {
Closure::<dyn FnMut(_)>::new(move |_: Event| { Closure::<dyn FnMut(_)>::new(move |_: Event| {
if let Some(value) = &file_reader.result().ok().and_then(|v| v.as_string()) { if let Some(value) = &file_reader.result().ok().and_then(|v| v.as_string()) {
let records = plate_tool_lib::csv::read_csv(value); let (header, data) = value.split_at(value.find("\n").unwrap());
let modified: String = header.to_lowercase() + data;
log::info!("{}", modified);
let mut rdr = csv::Reader::from_reader(value.as_bytes());
let mut records = Vec::new();
for record in rdr.deserialize::<crate::data::csv::TransferRecord>() {
match record {
Ok(r) => {
//log::debug!("{:?}", r);
records.push(r);
}
Err(e) => {
log::debug!("{:?}", e);
}
}
}
let mut sources: HashSet<String> = HashSet::new(); let mut sources: HashSet<String> = HashSet::new();
let mut destinations: HashSet<String> = HashSet::new(); let mut destinations: HashSet<String> = HashSet::new();

View File

@ -1,22 +1,26 @@
#![allow(non_snake_case)] #![allow(non_snake_case)]
use std::collections::HashSet;
use js_sys::Array; use js_sys::Array;
use lazy_static::lazy_static;
use regex::Regex;
use wasm_bindgen::{prelude::*, JsCast, JsValue}; use wasm_bindgen::{prelude::*, JsCast, JsValue};
use web_sys::{ use web_sys::{
Blob, HtmlAnchorElement, HtmlDialogElement, HtmlElement, Blob, FileReader, HtmlAnchorElement, HtmlButtonElement, HtmlDialogElement, HtmlElement,
HtmlFormElement, HtmlInputElement, Url, HtmlFormElement, HtmlInputElement, HtmlOptionElement, HtmlSelectElement, Url,
}; };
use yew::prelude::*; use yew::prelude::*;
use yewdux::prelude::*; use yewdux::prelude::*;
use crate::components::states::{CurrentTransfer, MainState}; use crate::components::states::{CurrentTransfer, MainState};
use crate::components::transfer_menu::letters_to_num;
use crate::state_to_csv; use crate::data::transfer::Transfer;
use crate::data::transfer_region::{Region, TransferRegion};
type NoParamsCallback = Box<dyn Fn(())>; use crate::data::csv::{state_to_csv, TransferRecord};
type NoParamsCallback = Box<dyn Fn(()) -> ()>;
pub fn create_close_button(close: &Closure<dyn FnMut(Event)>) -> HtmlElement { pub fn create_close_button(close: &Closure<dyn FnMut(Event)>) -> HtmlElement {
let document = web_sys::window().unwrap().document().unwrap(); let document = web_sys::window().unwrap().document().unwrap();
@ -29,7 +33,7 @@ pub fn create_close_button(close: &Closure<dyn FnMut(Event)>) -> HtmlElement {
close_button.set_class_name("close_button"); close_button.set_class_name("close_button");
close_button.set_onclick(Some(close.as_ref().unchecked_ref())); close_button.set_onclick(Some(close.as_ref().unchecked_ref()));
close_button return close_button;
} }
pub fn toggle_in_transfer_hashes_callback( pub fn toggle_in_transfer_hashes_callback(

View File

@ -5,8 +5,8 @@ use wasm_bindgen::JsCast;
use web_sys::{EventTarget, FormData, HtmlFormElement}; use web_sys::{EventTarget, FormData, HtmlFormElement};
use crate::components::states::MainState; use crate::components::states::MainState;
use plate_tool_lib::plate::*; use crate::data::plate::*;
use plate_tool_lib::plate_instances::PlateInstance; use crate::data::plate_instances::PlateInstance;
pub fn new_plate_callback( pub fn new_plate_callback(
dispatch: Dispatch<MainState>, dispatch: Dispatch<MainState>,

View File

@ -6,7 +6,7 @@ use yew::prelude::*;
use yewdux::prelude::*; use yewdux::prelude::*;
use crate::components::transfer_menu::RegionDisplay; use crate::components::transfer_menu::RegionDisplay;
use plate_tool_lib::{transfer::Transfer, transfer_region::Region}; use crate::data::{transfer::Transfer, transfer_region::Region};
use crate::components::states::{CurrentTransfer, MainState}; use crate::components::states::{CurrentTransfer, MainState};

View File

@ -1,14 +1,14 @@
use std::rc::Rc; use std::rc::Rc;
use uuid::Uuid; use uuid::Uuid;
use wasm_bindgen::JsCast; use wasm_bindgen::JsCast;
use web_sys::{EventTarget, HtmlElement, HtmlInputElement, HtmlSelectElement, HtmlOptionElement}; use web_sys::{EventTarget, HtmlElement};
use yew::prelude::*; use yew::prelude::*;
use yewdux::prelude::*; use yewdux::prelude::*;
use crate::components::states::{CurrentTransfer, MainState}; use crate::components::states::{CurrentTransfer, MainState};
use plate_tool_lib::{transfer_region::Region, plate::PlateFormat}; use crate::data::transfer_region::Region;
type NoParamsCallback = Box<dyn Fn(())>; type NoParamsCallback = Box<dyn Fn(()) -> ()>;
pub fn open_plate_info_callback( pub fn open_plate_info_callback(
plate_menu_id: UseStateHandle<Option<Uuid>>, plate_menu_id: UseStateHandle<Option<Uuid>>,
@ -45,38 +45,6 @@ pub fn plate_info_delete_callback(
}) })
} }
pub fn rename_onchange(id: Uuid, main_dispatch: Dispatch<MainState>) -> Callback<Event> {
Callback::from(move |e: Event| {
log::debug!("Changed name");
let input = e
.target()
.expect("Event must have target")
.dyn_into::<HtmlInputElement>()
.unwrap();
main_dispatch.reduce_mut(|state| state.rename_plate(id, &input.value()))
})
}
pub fn format_onchange(id: Uuid, main_dispatch: Dispatch<MainState>) -> Callback<Event> {
Callback::from(move |e: Event| {
log::debug!("Changing plate format");
let new_format: Option<PlateFormat> = e.target()
.expect("Event must have target")
.dyn_into::<HtmlSelectElement>()
.unwrap()
.selected_options()
.get_with_index(0)
.map(|el| {
el.dyn_into::<HtmlOptionElement>().unwrap()
})
.map(|opt_el| opt_el.value())
.and_then(|value| PlateFormat::try_from(value.as_str()).ok());
if let Some(format) = new_format {
main_dispatch.reduce_mut(|state| state.change_format(id, &format));
}
})
}
pub fn source_plate_select_callback( pub fn source_plate_select_callback(
main_dispatch: Dispatch<MainState>, main_dispatch: Dispatch<MainState>,
ct_dispatch: Dispatch<CurrentTransfer>, ct_dispatch: Dispatch<CurrentTransfer>,

View File

@ -1,4 +1,8 @@
#![allow(non_snake_case)] #![allow(non_snake_case)]
use js_sys::Array;
use wasm_bindgen::{prelude::*, JsCast, JsValue};
use web_sys::{Blob, HtmlAnchorElement, HtmlDialogElement, HtmlFormElement, HtmlInputElement, Url};
use yew::prelude::*; use yew::prelude::*;
use yewdux::prelude::*; use yewdux::prelude::*;
@ -8,7 +12,7 @@ use crate::components::states::{CurrentTransfer, MainState};
use crate::components::transfer_menu::TransferMenu; use crate::components::transfer_menu::TransferMenu;
use crate::components::tree::Tree; use crate::components::tree::Tree;
use plate_tool_lib::plate_instances::PlateInstance; use crate::data::plate_instances::PlateInstance;
use crate::components::callbacks::main_window_callbacks; use crate::components::callbacks::main_window_callbacks;

View File

@ -4,6 +4,7 @@ use yewdux::prelude::*;
use web_sys::HtmlDialogElement; use web_sys::HtmlDialogElement;
use crate::components::states::MainState; use crate::components::states::MainState;
use crate::data::plate_instances::PlateInstance;
use crate::components::callbacks::new_plate_dialog_callbacks; use crate::components::callbacks::new_plate_dialog_callbacks;
@ -68,3 +69,10 @@ pub fn NewPlateDialog(props: &NewPlateDialogProps) -> Html {
</dialog> </dialog>
} }
} }
impl From<&PlateInstance> for String {
fn from(value: &PlateInstance) -> Self {
// Could have other formatting here
format!("{}, {}", value.name, value.plate.plate_format)
}
}

View File

@ -0,0 +1,216 @@
#![allow(non_snake_case)]
use std::collections::HashMap;
use yew::prelude::*;
use yewdux::prelude::*;
use crate::components::states::{CurrentTransfer, MainState};
use crate::data::plate_instances::PlateInstance;
use crate::data::transfer::Transfer;
use crate::data::transfer_region::Region;
// Color Palette for the Source Plates, can be changed here
use crate::components::plates::util::Palettes;
const PALETTE: super::util::ColorPalette = Palettes::RAINBOW;
use super::super::transfer_menu::{num_to_letters, RegionDisplay};
#[derive(Properties, PartialEq)]
pub struct DestinationPlateProps {
pub source_plate: PlateInstance,
pub destination_plate: PlateInstance,
pub cell_height: f64,
}
#[function_component]
pub fn DestinationPlate(props: &DestinationPlateProps) -> Html {
let (main_state, _) = use_store::<MainState>();
let (ct_state, ct_dispatch) = use_store::<CurrentTransfer>();
let m_start_handle: UseStateHandle<Option<(u8, u8)>> = use_state_eq(|| None);
let m_end_handle: UseStateHandle<Option<(u8, u8)>> = use_state_eq(|| None);
let m_stat_handle: UseStateHandle<bool> = use_state_eq(|| false);
if !(*m_stat_handle) {
let (pt1, pt2) = match ct_state.transfer.transfer_region.dest_region {
Region::Point((x, y)) => ((x, y), (x, y)),
Region::Rect(c1, c2) => (c1, c2),
Region::Custom(_) => ((0,0), (0,0)),
};
m_start_handle.set(Some(pt1));
m_end_handle.set(Some(pt2));
}
let destination_wells = ct_state.transfer.transfer_region.get_destination_wells();
let ordered_ids: Vec<uuid::Uuid> = {
let mut ids: Vec<uuid::Uuid> = main_state.transfers.clone().iter()
.map(|x| x.id)
.collect();
ids.sort_unstable();
ids
};
let mouse_callback = {
let m_start_handle = m_start_handle.clone();
let m_end_handle = m_end_handle.clone();
let m_stat_handle = m_stat_handle.clone();
Callback::from(move |(i, j, t)| match t {
MouseEventType::Mousedown => {
m_start_handle.set(Some((i, j)));
m_end_handle.set(Some((i, j)));
m_stat_handle.set(true);
}
MouseEventType::Mouseenter => {
if *m_stat_handle {
m_end_handle.set(Some((i, j)));
}
}
})
};
let transfer_map = {
let ts = main_state
.transfers
.iter()
.filter(|t| t.dest_id == props.destination_plate.get_uuid());
let mut tooltip_map: HashMap<(u8, u8), Vec<&Transfer>> = HashMap::new();
for t in ts {
let dws = t.transfer_region.get_destination_wells();
for dw in dws {
if let Some(val) = tooltip_map.get_mut(&dw) {
val.push(t);
} else {
tooltip_map.insert(dw, vec![t]);
}
}
}
tooltip_map
};
let mouseup_callback = {
let m_start_handle = m_start_handle.clone();
let m_end_handle = m_end_handle.clone();
Callback::from(move |_: MouseEvent| {
m_stat_handle.set(false);
if let Some(ul) = *m_start_handle {
if let Some(br) = *m_end_handle {
if let Ok(rd) = RegionDisplay::try_from((ul.0, ul.1, br.0, br.1)) {
ct_dispatch.reduce_mut(|state| {
state.transfer.transfer_region.dest_region = Region::from(&rd);
});
}
}
}
})
};
let mouseleave_callback = Callback::clone(&mouseup_callback);
let screenshot_callback = Callback::from(|_| {
let _ = js_sys::eval("copy_screenshot_dest()");
});
let column_header = {
let headers = (1..=props.destination_plate.plate.size().1)
.map(|j| {
html! {<th>{format!("{:0>2}", j)}</th>}
})
.collect::<Html>();
html! {<tr><th />{ headers }</tr>}
};
let rows = (1..=props.destination_plate.plate.size().0)
.map(|i| {
let row_header = html! {<th>{num_to_letters(i)}</th>};
let row = (1..=props.destination_plate.plate.size().1).map(|j| {
html! {
<DestPlateCell i={i} j={j}
selected={super::source_plate::in_rect(*m_start_handle.clone(), *m_end_handle.clone(), (i,j))}
mouse={mouse_callback.clone()}
in_transfer={destination_wells.contains(&(i,j)) && main_state.preferences.in_transfer_hashes}
color={transfer_map.get(&(i,j))
.and_then(|t| t.last())
.map(|t| PALETTE.get_ordered(t.get_uuid(), &ordered_ids))
}
cell_height={props.cell_height}
title={transfer_map.get(&(i,j)).map(|transfers| format!("Used by: {}", transfers.iter().map(|t| t.name.clone())
.collect::<Vec<_>>().join(", ")))}
/>
}
}).collect::<Html>();
html! {
<tr>
{ row_header }{ row }
</tr>
}
})
.collect::<Html>();
html! {
<div ondblclick={screenshot_callback}
class={classes!{"dest_plate",
"W".to_owned()+&props.source_plate.plate.plate_format.to_string()}}>
<table
onmouseup={move |e| {
mouseup_callback.emit(e);
}}
onmouseleave={move |e| {
mouseleave_callback.emit(e);
}}>
{ column_header }{ rows }
</table>
</div>
}
}
#[derive(Debug)]
pub enum MouseEventType {
Mousedown,
Mouseenter,
}
#[derive(Properties, PartialEq)]
pub struct DestPlateCellProps {
pub i: u8,
pub j: u8,
pub selected: bool,
pub mouse: Callback<(u8, u8, MouseEventType)>,
pub in_transfer: Option<bool>,
color: Option<[f64; 3]>,
cell_height: f64,
title: Option<String>,
}
#[function_component]
fn DestPlateCell(props: &DestPlateCellProps) -> Html {
let selected_class = match props.selected {
true => Some("current_select"),
false => None,
};
let in_transfer_class = match props.in_transfer {
Some(true) => Some("in_transfer"),
_ => None,
};
let color = props.color.unwrap_or([255.0, 255.0, 255.0]);
let mouse = Callback::clone(&props.mouse);
let mouse2 = Callback::clone(&props.mouse);
let (i, j) = (props.i, props.j);
html! {
<td class={classes!("plate_cell", selected_class, in_transfer_class)}
style={format!("height: {}px;", props.cell_height)}
onmousedown={move |_| {
mouse.emit((i,j, MouseEventType::Mousedown))
}}
onmouseenter={move |_| {
mouse2.emit((i,j, MouseEventType::Mouseenter))
}}>
<div class="plate_cell_inner"
style={format!("background: rgba({},{},{},1);", color[0], color[1], color[2])}
title={if let Some(text) = &props.title {
text.clone()
} else { "".to_string() }}/>
</td>
}
}

View File

@ -0,0 +1,4 @@
pub mod destination_plate;
pub mod plate_container;
pub mod source_plate;
mod util;

View File

@ -3,12 +3,10 @@ use wasm_bindgen::prelude::Closure;
use wasm_bindgen::JsCast; use wasm_bindgen::JsCast;
use yew::prelude::*; use yew::prelude::*;
use plate_tool_lib::plate::PlateType; use crate::data::plate_instances::PlateInstance;
use plate_tool_lib::plate_instances::PlateInstance;
// use super::destination_plate::DestinationPlate; use super::destination_plate::DestinationPlate;
// use super::source_plate::SourcePlate; use super::source_plate::SourcePlate;
use super::plate::Plate;
#[derive(Properties, PartialEq)] #[derive(Properties, PartialEq)]
pub struct PlateContainerProps { pub struct PlateContainerProps {
@ -55,15 +53,13 @@ pub fn PlateContainer(props: &PlateContainerProps) -> Html {
if let Some(dpi) = props.destination_dims.clone() { if let Some(dpi) = props.destination_dims.clone() {
<div class="plate_container--source"> <div class="plate_container--source">
<h2>{spi.name.clone()}</h2> <h2>{spi.name.clone()}</h2>
<h2>{"Source"}</h2> <SourcePlate source_plate={spi.clone()} destination_plate={dpi.clone()}
<Plate source_plate={spi.clone()} destination_plate={dpi.clone()} cell_height={cell_height}/>
cell_height={cell_height} ptype={PlateType::Source}/>
</div> </div>
<div class="plate_container--destination"> <div class="plate_container--destination">
<h2>{dpi.name.clone()}</h2> <h2>{dpi.name.clone()}</h2>
<h2>{"Destination"}</h2> <DestinationPlate source_plate={spi.clone()} destination_plate={dpi.clone()}
<Plate source_plate={spi.clone()} destination_plate={dpi.clone()} cell_height={cell_height}/>
cell_height={cell_height} ptype={PlateType::Destination}/>
</div> </div>
} else { } else {
<h2>{"No Destination Plate Selected"}</h2> <h2>{"No Destination Plate Selected"}</h2>

View File

@ -5,33 +5,33 @@ use yew::prelude::*;
use yewdux::prelude::*; use yewdux::prelude::*;
use crate::components::states::{CurrentTransfer, MainState}; use crate::components::states::{CurrentTransfer, MainState};
use plate_tool_lib::plate::PlateType; use crate::data::plate_instances::PlateInstance;
use plate_tool_lib::transfer::Transfer; use crate::data::transfer::Transfer;
use plate_tool_lib::transfer_region::Region; use crate::data::transfer_region::Region;
// Color Palette for the Source Plates, can be changed here // Color Palette for the Source Plates, can be changed here
use crate::components::plates::util::Palettes; use crate::components::plates::util::Palettes;
const PALETTE: super::util::ColorPalette = Palettes::RAINBOW; const PALETTE: super::util::ColorPalette = Palettes::RAINBOW;
use plate_tool_lib::util::num_to_letters; use super::super::transfer_menu::{num_to_letters, RegionDisplay};
use super::plate_data::*; #[derive(PartialEq, Properties)]
use super::plate_callbacks; pub struct SourcePlateProps {
pub source_plate: PlateInstance,
pub destination_plate: PlateInstance,
pub cell_height: f64,
}
#[function_component] #[function_component]
pub fn Plate(props: &PlateProps) -> Html { pub fn SourcePlate(props: &SourcePlateProps) -> Html {
let (main_state, _) = use_store::<MainState>(); let (main_state, _) = use_store::<MainState>();
let (ct_state, ct_dispatch) = use_store::<CurrentTransfer>(); let (ct_state, ct_dispatch) = use_store::<CurrentTransfer>();
let m_start_handle: MStartHandle = use_state_eq(|| None); let m_start_handle: UseStateHandle<Option<(u8, u8)>> = use_state_eq(|| None);
let m_end_handle: MEndHandle = use_state_eq(|| None); let m_end_handle: UseStateHandle<Option<(u8, u8)>> = use_state_eq(|| None);
let m_stat_handle: MStatHandle = use_state_eq(|| false); let m_stat_handle: UseStateHandle<bool> = use_state_eq(|| false);
if !(*m_stat_handle) { if !(*m_stat_handle) {
let region = match props.ptype { let (pt1, pt2) = match ct_state.transfer.transfer_region.source_region {
PlateType::Source => ct_state.transfer.transfer_region.source_region.clone(),
PlateType::Destination => ct_state.transfer.transfer_region.dest_region.clone(),
};
let (pt1, pt2) = match region {
Region::Point((x, y)) => ((x, y), (x, y)), Region::Point((x, y)) => ((x, y), (x, y)),
Region::Rect(c1, c2) => (c1, c2), Region::Rect(c1, c2) => (c1, c2),
Region::Custom(_) => ((0,0), (0,0)), Region::Custom(_) => ((0,0), (0,0)),
@ -40,35 +40,31 @@ pub fn Plate(props: &PlateProps) -> Html {
m_end_handle.set(Some(pt2)); m_end_handle.set(Some(pt2));
} }
let tooltip_map = { let transfer_map = {
let transfers = main_state.transfers.iter().filter(|t| match props.ptype { let ts = main_state
PlateType::Source => t.source_id == props.source_plate.get_uuid(), .transfers
PlateType::Destination => t.dest_id == props.destination_plate.get_uuid(), .iter()
}); .filter(|t| t.source_id == props.source_plate.get_uuid());
let mut tooltip_map: HashMap<(u8, u8), Vec<&Transfer>> = HashMap::new(); let mut tooltip_map: HashMap<(u8, u8), Vec<&Transfer>> = HashMap::new();
for transfer in transfers { for t in ts {
let wells = match props.ptype { let sws = t.transfer_region.get_source_wells();
PlateType::Source => transfer.transfer_region.get_source_wells(), for sw in sws {
PlateType::Destination => transfer.transfer_region.get_destination_wells(), if let Some(val) = tooltip_map.get_mut(&sw) {
}; val.push(t);
for well in wells {
if let Some(val) = tooltip_map.get_mut(&well) {
val.push(transfer);
} else { } else {
tooltip_map.insert(well, vec![transfer]); tooltip_map.insert(sw, vec![t]);
} }
} }
} }
tooltip_map tooltip_map
}; };
let wells = match props.ptype { let source_wells = ct_state.transfer.transfer_region.get_source_wells();
PlateType::Source => ct_state.transfer.transfer_region.get_source_wells(),
PlateType::Destination => ct_state.transfer.transfer_region.get_destination_wells(),
};
let ordered_ids: Vec<uuid::Uuid> = { let ordered_ids: Vec<uuid::Uuid> = {
let mut ids: Vec<uuid::Uuid> = main_state.transfers.clone().iter().map(|x| x.id).collect(); let mut ids: Vec<uuid::Uuid> = main_state.transfers.clone().iter()
.map(|x| x.id)
.collect();
ids.sort_unstable(); ids.sort_unstable();
ids ids
}; };
@ -77,13 +73,37 @@ pub fn Plate(props: &PlateProps) -> Html {
let m_start_handle = m_start_handle.clone(); let m_start_handle = m_start_handle.clone();
let m_end_handle = m_end_handle.clone(); let m_end_handle = m_end_handle.clone();
let m_stat_handle = m_stat_handle.clone(); let m_stat_handle = m_stat_handle.clone();
plate_callbacks::mouse_callback(m_start_handle, m_end_handle, m_stat_handle)
Callback::from(move |(i, j, t)| match t {
MouseEventType::Mousedown => {
m_start_handle.set(Some((i, j)));
m_end_handle.set(Some((i, j)));
m_stat_handle.set(true);
}
MouseEventType::Mouseenter => {
if *m_stat_handle {
m_end_handle.set(Some((i, j)));
}
}
})
}; };
let mouseup_callback = { let mouseup_callback = {
let m_start_handle = m_start_handle.clone(); let m_start_handle = m_start_handle.clone();
let m_end_handle = m_end_handle.clone(); let m_end_handle = m_end_handle.clone();
plate_callbacks::mouseup_callback(m_start_handle, m_end_handle, m_stat_handle, ct_dispatch)
Callback::from(move |_: MouseEvent| {
m_stat_handle.set(false);
if let Some(ul) = *m_start_handle {
if let Some(br) = *m_end_handle {
if let Ok(rd) = RegionDisplay::try_from((ul.0, ul.1, br.0, br.1)) {
ct_dispatch.reduce_mut(|state| {
state.transfer.transfer_region.source_region = Region::from(&rd);
});
}
}
}
})
}; };
let mouseleave_callback = Callback::clone(&mouseup_callback); let mouseleave_callback = Callback::clone(&mouseup_callback);
@ -92,20 +112,8 @@ pub fn Plate(props: &PlateProps) -> Html {
let _ = js_sys::eval("copy_screenshot_src()"); let _ = js_sys::eval("copy_screenshot_src()");
}); });
let width = match props.ptype {
PlateType::Source => props.source_plate.plate.size().1,
PlateType::Destination => props.destination_plate.plate.size().1,
};
let height = match props.ptype {
PlateType::Source => props.source_plate.plate.size().0,
PlateType::Destination => props.destination_plate.plate.size().0,
};
let pformat = match props.ptype {
PlateType::Source => props.source_plate.plate.plate_format,
PlateType::Destination => props.destination_plate.plate.plate_format,
};
let column_header = { let column_header = {
let headers = (1..=width) let headers = (1..=props.source_plate.plate.size().1)
.map(|j| { .map(|j| {
html! {<th> html! {<th>
{format!("{:0>2}", j)} {format!("{:0>2}", j)}
@ -114,23 +122,22 @@ pub fn Plate(props: &PlateProps) -> Html {
.collect::<Html>(); .collect::<Html>();
html! {<tr><th />{ headers }</tr>} html! {<tr><th />{ headers }</tr>}
}; };
let rows = let rows = (1..=props.source_plate.plate.size().0)
(1..=height)
.map(|i| { .map(|i| {
let row_header = html! {<th>{num_to_letters(i)}</th>}; let row_header = html! {<th>{num_to_letters(i)}</th>};
let row = (1..=width) let row = (1..=props.source_plate.plate.size().1)
.map(|j| { .map(|j| {
html! { html! {
<PlateCell i={i} j={j} <SourcePlateCell i={i} j={j}
selected={in_rect(*m_start_handle.clone(), *m_end_handle.clone(), (i,j))} selected={in_rect(*m_start_handle.clone(), *m_end_handle.clone(), (i,j))}
mouse={mouse_callback.clone()} mouse={mouse_callback.clone()}
in_transfer={wells.contains(&(i,j)) && main_state.preferences.in_transfer_hashes} in_transfer={source_wells.contains(&(i,j)) && main_state.preferences.in_transfer_hashes}
color={tooltip_map.get(&(i,j)) color={transfer_map.get(&(i,j))
.and_then(|t| t.last()) .and_then(|t| t.last())
.map(|t| PALETTE.get_ordered(t.get_uuid(), &ordered_ids)) .map(|t| PALETTE.get_ordered(t.get_uuid(), &ordered_ids))
} }
cell_height={props.cell_height} cell_height={props.cell_height}
title={tooltip_map.get(&(i,j)).map(|transfers| format!("Used by: {}", transfers.iter().map(|t| t.name.clone()) title={transfer_map.get(&(i,j)).map(|transfers| format!("Used by: {}", transfers.iter().map(|t| t.name.clone())
.collect::<Vec<_>>().join(", ")))} .collect::<Vec<_>>().join(", ")))}
/> />
} }
@ -146,11 +153,8 @@ pub fn Plate(props: &PlateProps) -> Html {
html! { html! {
<div ondblclick={screenshot_callback} <div ondblclick={screenshot_callback}
class={classes!{match props.ptype { class={classes!{"source_plate",
PlateType::Source => "source_plate", "W".to_owned()+&props.source_plate.plate.plate_format.to_string()}}>
PlateType::Destination => "dest_plate",
},
"W".to_owned()+&pformat.to_string()}}>
<table <table
onmouseup={move |e| { onmouseup={move |e| {
mouseup_callback.emit(e); mouseup_callback.emit(e);
@ -166,7 +170,7 @@ pub fn Plate(props: &PlateProps) -> Html {
} }
#[derive(PartialEq, Properties)] #[derive(PartialEq, Properties)]
pub struct PlateCellProps { pub struct SourcePlateCellProps {
i: u8, i: u8,
j: u8, j: u8,
selected: bool, selected: bool,
@ -176,9 +180,14 @@ pub struct PlateCellProps {
cell_height: f64, cell_height: f64,
title: Option<String>, title: Option<String>,
} }
#[derive(Debug)]
pub enum MouseEventType {
Mousedown,
Mouseenter,
}
#[function_component] #[function_component]
fn PlateCell(props: &PlateCellProps) -> Html { fn SourcePlateCell(props: &SourcePlateCellProps) -> Html {
let selected_class = match props.selected { let selected_class = match props.selected {
true => Some("current_select"), true => Some("current_select"),
false => None, false => None,

View File

@ -2,6 +2,10 @@
// https://iquilezles.org/articles/palettes/ // https://iquilezles.org/articles/palettes/
// http://dev.thi.ng/gradients/ // http://dev.thi.ng/gradients/
use rand::prelude::*;
use rand::rngs::SmallRng;
use lazy_static::lazy_static;
#[derive(Clone, Copy, PartialEq, Debug)] #[derive(Clone, Copy, PartialEq, Debug)]
pub struct ColorPalette { pub struct ColorPalette {
a: [f64; 3], a: [f64; 3],
@ -37,17 +41,17 @@ impl ColorPalette {
// self.get(r.gen_range(0.0..1.0f64)) // self.get(r.gen_range(0.0..1.0f64))
// } // }
pub fn get_ordered(&self, t: uuid::Uuid, ordered_uuids: &[uuid::Uuid]) pub fn get_ordered(&self, t: uuid::Uuid, ordered_uuids: &Vec<uuid::Uuid>)
-> [f64; 3] { -> [f64; 3] {
let index = ordered_uuids.iter().position(|&x| x == t).expect("uuid must be in list of uuids") + 1; let index = ordered_uuids.iter().position(|&x| x == t).expect("uuid must be in list of uuids") + 1;
self.get(Self::space_evenly(index)) return self.get(Self::space_evenly(index))
} }
fn space_evenly(x: usize) -> f64 { fn space_evenly(x: usize) -> f64 {
let e: usize = (x.ilog2() + 1) as usize; let e: usize = (x.ilog2() + 1) as usize;
let d: usize = 2usize.pow(e as u32); let d: usize = (2usize.pow(e as u32)) as usize;
let n: usize = (2*x + 1) % d; let n: usize = (2*x + 1) % d;
(n as f64) / (d as f64) return (n as f64) / (d as f64);
} }
} }

View File

@ -2,9 +2,9 @@ use serde::{Deserialize, Serialize};
use uuid::Uuid; use uuid::Uuid;
use yewdux::{prelude::*, storage}; use yewdux::{prelude::*, storage};
use plate_tool_lib::plate::*; use crate::data::plate::*;
use plate_tool_lib::plate_instances::PlateInstance; use crate::data::plate_instances::PlateInstance;
use plate_tool_lib::transfer::Transfer; use crate::data::transfer::Transfer;
#[derive(Debug, Default, Clone, PartialEq, Serialize, Deserialize, Store)] #[derive(Debug, Default, Clone, PartialEq, Serialize, Deserialize, Store)]
#[store(storage = "session")] #[store(storage = "session")]
@ -108,13 +108,4 @@ impl MainState {
self.destination_plates[index].change_name(new_name.to_string()); self.destination_plates[index].change_name(new_name.to_string());
} }
} }
pub fn change_format(&mut self, id: Uuid, new_format: &PlateFormat) {
if let Some(index) = self.source_plates.iter().position(|spi| spi.get_uuid() == id) {
self.source_plates[index].change_format(new_format);
}
if let Some(index) = self.destination_plates.iter().position(|dpi| dpi.get_uuid() == id) {
self.destination_plates[index].change_format(new_format);
}
}
} }

View File

@ -7,8 +7,7 @@ use yew::prelude::*;
use yewdux::prelude::*; use yewdux::prelude::*;
use crate::components::callbacks::transfer_menu_callbacks; use crate::components::callbacks::transfer_menu_callbacks;
use plate_tool_lib::transfer_region::Region; use crate::data::transfer_region::Region;
use plate_tool_lib::util::{letters_to_num, num_to_letters};
use super::states::{CurrentTransfer, MainState}; use super::states::{CurrentTransfer, MainState};
@ -206,7 +205,7 @@ impl TryFrom<&str> for RegionDisplay {
lazy_static! { lazy_static! {
static ref REGION_REGEX: Regex = Regex::new(r"([A-Z]+)(\d+):([A-Z]+)(\d+)").unwrap(); static ref REGION_REGEX: Regex = Regex::new(r"([A-Z]+)(\d+):([A-Z]+)(\d+)").unwrap();
} }
if let Some(captures) = REGION_REGEX.captures(value) { if let Some(captures) = REGION_REGEX.captures(&value) {
if captures.len() != 5 { if captures.len() != 5 {
return Err("Not enough capture groups"); return Err("Not enough capture groups");
} }
@ -278,12 +277,79 @@ impl TryFrom<(u8, u8, u8, u8)> for RegionDisplay {
}) })
} }
} }
pub fn letters_to_num(letters: &str) -> Option<u8> {
let mut num: u8 = 0;
for (i, letter) in letters.to_ascii_uppercase().chars().rev().enumerate() {
log::debug!("{}, {}", i, letter);
let n = letter as u8;
if !(65..=90).contains(&n) {
return None;
}
num = num.checked_add((26_i32.pow(i as u32) * (n as i32 - 64)).try_into().ok()?)?;
}
Some(num)
}
pub fn num_to_letters(num: u8) -> Option<String> {
if num == 0 {
return None;
} // Otherwise, we will not return none!
// As another note, we can't represent higher than "IV" anyway;
// thus there's no reason for a loop (26^n with n>1 will NOT occur).
let mut text = "".to_string();
let mut digit1 = num.div_euclid(26u8);
let mut digit2 = num.rem_euclid(26u8);
if digit1 > 0 && digit2 == 0u8 {
digit1 -= 1;
digit2 = 26;
}
if digit1 != 0 {
text.push((64 + digit1) as char)
}
text.push((64 + digit2) as char);
Some(text.to_string())
}
#[cfg(test)] #[cfg(test)]
mod tests { mod tests {
use wasm_bindgen_test::*; use wasm_bindgen_test::*;
use super::*; use super::{letters_to_num, num_to_letters, RegionDisplay};
#[test]
#[wasm_bindgen_test]
fn test_letters_to_num() {
assert_eq!(letters_to_num("D"), Some(4));
assert_eq!(letters_to_num("d"), None);
assert_eq!(letters_to_num("AD"), Some(26 + 4));
assert_eq!(letters_to_num("CG"), Some(3 * 26 + 7));
}
#[test]
#[wasm_bindgen_test]
fn test_num_to_letters() {
println!("27 is {:?}", num_to_letters(27));
assert_eq!(num_to_letters(1), Some("A".to_string()));
assert_eq!(num_to_letters(26), Some("Z".to_string()));
assert_eq!(num_to_letters(27), Some("AA".to_string()));
assert_eq!(num_to_letters(111), Some("DG".to_string()));
}
#[test]
#[wasm_bindgen_test]
fn test_l2n_and_n2l() {
assert_eq!(
num_to_letters(letters_to_num("A").unwrap()),
Some("A".to_string())
);
assert_eq!(
num_to_letters(letters_to_num("BJ").unwrap()),
Some("BJ".to_string())
);
for i in 1..=255 {
assert_eq!(letters_to_num(&num_to_letters(i).unwrap()), Some(i));
}
}
#[test] #[test]
#[wasm_bindgen_test] #[wasm_bindgen_test]

View File

@ -1,14 +1,13 @@
#![allow(non_snake_case)] #![allow(non_snake_case)]
use plate_tool_lib::plate::PlateFormat;
use uuid::Uuid; use uuid::Uuid;
use wasm_bindgen::JsCast; use wasm_bindgen::JsCast;
use web_sys::{HtmlDialogElement, HtmlInputElement}; use web_sys::{HtmlDialogElement, HtmlInputElement};
use yew::prelude::*; use yew::prelude::*;
use yewdux::prelude::*; use yewdux::prelude::*;
use crate::components::callbacks::tree_callbacks;
use crate::components::states::{CurrentTransfer, MainState}; use crate::components::states::{CurrentTransfer, MainState};
use crate::components::callbacks::tree_callbacks;
#[derive(PartialEq, Properties)] #[derive(PartialEq, Properties)]
pub struct TreeProps { pub struct TreeProps {
@ -158,32 +157,23 @@ fn PlateInfoModal(props: &PlateInfoModalProps) -> Html {
Some(plate) => plate.name.clone(), Some(plate) => plate.name.clone(),
None => "Not Found".to_string(), None => "Not Found".to_string(),
}; };
let plate_format = plate.map(|p| p.plate.plate_format);
let plate_formats = vec![
PlateFormat::W6,
PlateFormat::W12,
PlateFormat::W24,
PlateFormat::W48,
PlateFormat::W96,
PlateFormat::W384,
PlateFormat::W1536,
PlateFormat::W3456,
];
let plate_format_options = plate_formats.iter().map(|v| {
let selected = Some(v) == plate_format.as_ref();
html!{
<option value={v.to_string()} selected={selected}>{ v.to_string() }</option>
}
});
let onclose = { let onclose = {
let dialog_close_callback = props.dialog_close_callback.clone(); let dialog_close_callback = props.dialog_close_callback.clone();
move |_| dialog_close_callback.emit(()) move |_| dialog_close_callback.emit(())
}; };
let rename_onchange = tree_callbacks::rename_onchange(props.id, main_dispatch.clone()); let rename_onchange = {
let id = props.id;
let format_onchange = tree_callbacks::format_onchange(props.id, main_dispatch.clone()); Callback::from(move |e: Event| {
log::debug!("Changed name");
let input = e
.target()
.expect("Event must have target")
.dyn_into::<HtmlInputElement>()
.unwrap();
main_dispatch.reduce_mut(|state| state.rename_plate(id, &input.value()))
})
};
let delete_onclick = { let delete_onclick = {
let delete_button_callback = props.delete_button_callback.clone(); let delete_button_callback = props.delete_button_callback.clone();
@ -214,11 +204,6 @@ fn PlateInfoModal(props: &PlateInfoModalProps) -> Html {
<h2>{"Plate Info"}</h2> <h2>{"Plate Info"}</h2>
<h3>{"Name: "}<input type="text" value={plate_name} onchange={rename_onchange}/></h3> <h3>{"Name: "}<input type="text" value={plate_name} onchange={rename_onchange}/></h3>
<button onclick={delete_onclick}>{"Delete"}</button> <button onclick={delete_onclick}>{"Delete"}</button>
if let Some(_) = plate_format {
<select name="modal_plate_format" onchange={format_onchange}>
{ for plate_format_options }
</select>
}
<form class="modal_close" method="dialog"><button /></form> <form class="modal_close" method="dialog"><button /></form>
</dialog> </dialog>
} }

View File

@ -1,7 +1,8 @@
use crate::transfer::Transfer; use crate::components::states::MainState;
use crate::util::*; use crate::components::transfer_menu::num_to_letters;
use crate::data::transfer::Transfer;
use serde::{Deserialize, Serialize}; use serde::{Serialize, Deserialize};
use std::error::Error; use std::error::Error;
#[derive(Serialize, Deserialize, Debug)] #[derive(Serialize, Deserialize, Debug)]
@ -10,30 +11,39 @@ pub struct TransferRecord {
pub source_plate: String, pub source_plate: String,
#[serde(rename = "Source Well", alias = "source well", alias = "src well")] #[serde(rename = "Source Well", alias = "source well", alias = "src well")]
pub source_well: String, pub source_well: String,
#[serde( #[serde(rename = "Dest Plate", alias = "dest plate", alias = "destination plate")]
rename = "Dest Plate",
alias = "dest plate",
alias = "destination plate"
)]
pub destination_plate: String, pub destination_plate: String,
#[serde( #[serde(rename = "Destination Well", alias = "destination well", alias = "dest well")]
rename = "Destination Well",
alias = "destination well",
alias = "dest well"
)]
pub destination_well: String, pub destination_well: String,
#[serde(rename = "Transfer Volume", alias = "transfer volume")] #[serde(rename = "Transfer Volume", alias = "transfer volume")]
#[serde(default = "volume_default")]
pub volume: f32, pub volume: f32,
#[serde(rename = "Concentration", alias = "concentration")] #[serde(rename = "Concentration", alias = "concentration")]
pub concentration: Option<f32>, pub concentration: Option<f32>,
} }
pub fn volume_default() -> f32 { pub fn state_to_csv(state: &MainState) -> Result<String, Box<dyn Error>> {
Transfer::default().volume let mut records: Vec<TransferRecord> = Vec::new();
for transfer in &state.transfers {
let src_barcode = state
.source_plates
.iter()
.find(|spi| spi.get_uuid() == transfer.source_id)
.ok_or("Found unpurged transfer")?;
let dest_barcode = state
.destination_plates
.iter()
.find(|dpi| dpi.get_uuid() == transfer.dest_id)
.ok_or("Found unpurged transfer")?;
records.append(&mut transfer_to_records(
transfer,
&src_barcode.name,
&dest_barcode.name,
))
}
return records_to_csv(records);
} }
pub fn transfer_to_records( fn transfer_to_records(
tr: &Transfer, tr: &Transfer,
src_barcode: &str, src_barcode: &str,
dest_barcode: &str, dest_barcode: &str,
@ -61,7 +71,7 @@ pub fn transfer_to_records(
records records
} }
pub fn records_to_csv(trs: Vec<TransferRecord>) -> Result<String, Box<dyn Error>> { fn records_to_csv(trs: Vec<TransferRecord>) -> Result<String, Box<dyn Error>> {
let mut wtr = csv::WriterBuilder::new().from_writer(vec![]); let mut wtr = csv::WriterBuilder::new().from_writer(vec![]);
for record in trs { for record in trs {
wtr.serialize(record)? wtr.serialize(record)?
@ -69,23 +79,3 @@ pub fn records_to_csv(trs: Vec<TransferRecord>) -> Result<String, Box<dyn Error>
let data = String::from_utf8(wtr.into_inner()?)?; let data = String::from_utf8(wtr.into_inner()?)?;
Ok(data) Ok(data)
} }
pub fn read_csv(data: &str) -> Vec<TransferRecord> {
let (header, data) = data.split_at(data.find('\n').unwrap());
let modified: String = header.to_lowercase() + data;
let mut rdr = csv::Reader::from_reader(modified.as_bytes());
let mut records: Vec<TransferRecord> = Vec::new();
for record in rdr.deserialize::<TransferRecord>() {
match record {
Ok(r) => {
//log::debug!("{:?}", r);
records.push(r);
}
Err(e) => {
log::debug!("{:?}", e);
}
}
}
records
}

View File

@ -3,4 +3,3 @@ pub mod plate;
pub mod plate_instances; pub mod plate_instances;
pub mod transfer; pub mod transfer;
pub mod transfer_region; pub mod transfer_region;
pub mod util;

View File

@ -60,23 +60,6 @@ impl std::fmt::Display for PlateFormat {
} }
} }
} }
impl TryFrom<&str> for PlateFormat {
type Error = ();
fn try_from(value: &str) -> Result<Self, Self::Error> {
let lower = value.to_lowercase();
match lower.trim() {
"w6" | "6" => Ok(PlateFormat::W6),
"w12" | "12" => Ok(PlateFormat::W12),
"w24" | "24" => Ok(PlateFormat::W24),
"w48" | "48" => Ok(PlateFormat::W48),
"w96" | "96" => Ok(PlateFormat::W96),
"w384" | "384" => Ok(PlateFormat::W384),
"w1536" | "1536" => Ok(PlateFormat::W1536),
"w3456" | "3456" => Ok(PlateFormat::W3456),
_ => Err(())
}
}
}
impl PlateFormat { impl PlateFormat {
pub fn size(&self) -> (u8, u8) { pub fn size(&self) -> (u8, u8) {

View File

@ -30,10 +30,6 @@ impl PlateInstance {
pub fn change_name(&mut self, new_name: String) { pub fn change_name(&mut self, new_name: String) {
self.name = new_name; self.name = new_name;
} }
pub fn change_format(&mut self, new_format: &PlateFormat) {
self.plate.plate_format = *new_format;
}
} }
impl From<Plate> for PlateInstance { impl From<Plate> for PlateInstance {
@ -45,10 +41,3 @@ impl From<Plate> for PlateInstance {
} }
} }
} }
impl From<&PlateInstance> for String {
fn from(value: &PlateInstance) -> Self {
// Could have other formatting here
format!("{}, {}", value.name, value.plate.plate_format)
}
}

View File

@ -26,7 +26,7 @@ impl Default for Transfer {
name: "New Transfer".to_string(), name: "New Transfer".to_string(),
id: Default::default(), id: Default::default(),
transfer_region: Default::default(), transfer_region: Default::default(),
volume: default_volume(), volume: 2.5f32,
} }
} }
} }

View File

@ -1,5 +1,7 @@
use serde::{Deserialize, Serialize}; use serde::{Deserialize, Serialize};
use crate::components::transfer_menu::RegionDisplay;
use super::plate::Plate; use super::plate::Plate;
#[derive(Clone, PartialEq, Eq, Serialize, Deserialize, Debug)] #[derive(Clone, PartialEq, Eq, Serialize, Deserialize, Debug)]
@ -30,11 +32,8 @@ impl TryFrom<Region> for ((u8, u8), (u8, u8)) {
} }
} }
} }
type Corner = (u8, u8);
type Rectangle = (Corner, Corner);
impl Region { impl Region {
pub fn new_custom(transfers: &Vec<Rectangle>) -> Self { pub fn new_custom(transfers: &Vec<((u8, u8), (u8, u8))>) -> Self {
let mut src_pts: Vec<(u8, u8)> = Vec::with_capacity(transfers.len()); let mut src_pts: Vec<(u8, u8)> = Vec::with_capacity(transfers.len());
let mut dest_pts: Vec<(u8, u8)> = Vec::with_capacity(transfers.len()); let mut dest_pts: Vec<(u8, u8)> = Vec::with_capacity(transfers.len());
@ -78,7 +77,7 @@ impl TransferRegion {
match &self.source_region { match &self.source_region {
Region::Rect(c1, c2) => { Region::Rect(c1, c2) => {
let mut wells = Vec::<(u8, u8)>::new(); let mut wells = Vec::<(u8, u8)>::new();
let (ul, br) = standardize_rectangle(c1, c2); let (ul, br) = standardize_rectangle(&c1, &c2);
let (interleave_i, interleave_j) = self.interleave_source; let (interleave_i, interleave_j) = self.interleave_source;
// NOTE: This will panic if either is 0! // NOTE: This will panic if either is 0!
// We'll reassign these values (still not mutable) just in case. // We'll reassign these values (still not mutable) just in case.
@ -175,8 +174,8 @@ impl TransferRegion {
Region::Rect(c1, c2) => { Region::Rect(c1, c2) => {
Box::new(move |(i, j)| { Box::new(move |(i, j)| {
if source_wells.contains(&(i, j)) { if source_wells.contains(&(i, j)) {
let possible_destination_wells = create_dense_rectangle(c1, c2); let possible_destination_wells = create_dense_rectangle(&c1, &c2);
let (d_ul, d_br) = standardize_rectangle(c1, c2); let (d_ul, d_br) = standardize_rectangle(&c1, &c2);
let (s_ul, s_br) = let (s_ul, s_br) =
standardize_rectangle(&source_corners.0, &source_corners.1); standardize_rectangle(&source_corners.0, &source_corners.1);
let s_dims = ( let s_dims = (
@ -187,7 +186,7 @@ impl TransferRegion {
d_br.0.checked_sub(d_ul.0).unwrap() + 1, d_br.0.checked_sub(d_ul.0).unwrap() + 1,
d_br.1.checked_sub(d_ul.1).unwrap() + 1, d_br.1.checked_sub(d_ul.1).unwrap() + 1,
); );
let number_used_src_wells = ( let N_s = (
// Number of used source wells // Number of used source wells
(s_dims.0 + il_source.0.unsigned_abs() - 1) (s_dims.0 + il_source.0.unsigned_abs() - 1)
.div_euclid(il_source.0.unsigned_abs()), .div_euclid(il_source.0.unsigned_abs()),
@ -198,14 +197,14 @@ impl TransferRegion {
// How many times can we replicate? // How many times can we replicate?
(1..) (1..)
.position(|n| { .position(|n| {
n * number_used_src_wells.0 * il_dest.0.unsigned_abs() - il_dest.0.unsigned_abs() n * N_s.0 * il_dest.0.unsigned_abs() - il_dest.0.unsigned_abs()
+ 1 + 1
> d_dims.0 > d_dims.0
}) })
.unwrap() as u8, .unwrap() as u8,
(1..) (1..)
.position(|n| { .position(|n| {
n * number_used_src_wells.1 * il_dest.1.unsigned_abs() - il_dest.1.unsigned_abs() n * N_s.1 * il_dest.1.unsigned_abs() - il_dest.1.unsigned_abs()
+ 1 + 1
> d_dims.1 > d_dims.1
}) })
@ -223,26 +222,26 @@ impl TransferRegion {
.into_iter() .into_iter()
.filter(|(x, _)| { .filter(|(x, _)| {
x.checked_sub(d_ul.0).unwrap() x.checked_sub(d_ul.0).unwrap()
% (number_used_src_wells.0 * il_dest.0.unsigned_abs()) // Counter along x % (N_s.0 * il_dest.0.unsigned_abs()) // Counter along x
== (il_dest.0.unsigned_abs() *i) == (il_dest.0.unsigned_abs() *i)
% (number_used_src_wells.0 * il_dest.0.unsigned_abs()) % (N_s.0 * il_dest.0.unsigned_abs())
}) })
.filter(|(_, y)| { .filter(|(_, y)| {
y.checked_sub(d_ul.1).unwrap() y.checked_sub(d_ul.1).unwrap()
% (number_used_src_wells.1 * il_dest.1.unsigned_abs()) // Counter along u % (N_s.1 * il_dest.1.unsigned_abs()) // Counter along u
== (il_dest.1.unsigned_abs() *j) == (il_dest.1.unsigned_abs() *j)
% (number_used_src_wells.1 * il_dest.1.unsigned_abs()) % (N_s.1 * il_dest.1.unsigned_abs())
}) })
.filter(|(x, y)| { .filter(|(x, y)| {
// How many times have we replicated? < How many are we allowed // How many times have we replicated? < How many are we allowed
// to replicate? // to replicate?
x.checked_sub(d_ul.0) x.checked_sub(d_ul.0)
.unwrap() .unwrap()
.div_euclid(number_used_src_wells.0 * il_dest.0.unsigned_abs()) .div_euclid(N_s.0 * il_dest.0.unsigned_abs())
< count.0 < count.0
&& y.checked_sub(d_ul.1) && y.checked_sub(d_ul.1)
.unwrap() .unwrap()
.div_euclid(number_used_src_wells.1 * il_dest.1.unsigned_abs()) .div_euclid(N_s.1 * il_dest.1.unsigned_abs())
< count.1 < count.1
}) })
.collect(), .collect(),

View File

@ -1,15 +1,12 @@
#![allow(non_snake_case)] #![allow(non_snake_case)]
mod components; mod components;
mod data;
use std::error::Error;
use components::main_window::MainWindow; use components::main_window::MainWindow;
use components::states::MainState;
use plate_tool_lib::csv::*;
use yew::prelude::*; use yew::prelude::*;
#[cfg(debug_assertions)] #[cfg(debug_assertions)]
use plate_tool_lib::*; use data::*;
#[function_component] #[function_component]
pub fn App() -> Html { pub fn App() -> Html {
@ -38,25 +35,3 @@ pub fn plate_test() {
println!("{:?} -> {:?}", w, m(w)); println!("{:?} -> {:?}", w, m(w));
} }
} }
pub fn state_to_csv(state: &MainState) -> Result<String, Box<dyn Error>> {
let mut records: Vec<TransferRecord> = Vec::new();
for transfer in &state.transfers {
let src_barcode = state
.source_plates
.iter()
.find(|spi| spi.get_uuid() == transfer.source_id)
.ok_or("Found unpurged transfer")?;
let dest_barcode = state
.destination_plates
.iter()
.find(|dpi| dpi.get_uuid() == transfer.dest_id)
.ok_or("Found unpurged transfer")?;
records.append(&mut transfer_to_records(
transfer,
&src_barcode.name,
&dest_barcode.name,
))
}
records_to_csv(records)
}

View File

@ -1,4 +1,4 @@
use plate_tool_web::App; use plate_tool::App;
fn main() { fn main() {
wasm_logger::init(wasm_logger::Config::default()); wasm_logger::init(wasm_logger::Config::default());