Cargo.lock

@@ -34,12 +34,6 @@ dependencies = [
  "syn 2.0.16",
 ]
 
-[[package]]
-name = "atomic"
-version = "0.5.3"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "c59bdb34bc650a32731b31bd8f0829cc15d24a708ee31559e0bb34f2bc320cba"
-
 [[package]]
 name = "autocfg"
 version = "1.1.0"
@@ -561,11 +555,9 @@ name = "plate-tool"
 version = "0.1.0"
 dependencies = [
  "csv",
- "getrandom",
  "js-sys",
  "lazy_static",
  "log",
- "rand",
  "regex",
  "serde",
  "serde_json",
@@ -891,11 +883,10 @@ checksum = "e5464a87b239f13a63a501f2701565754bae92d243d4bb7eb12f6d57d2269bf4"
 
 [[package]]
 name = "uuid"
-version = "1.6.1"
+version = "1.3.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "5e395fcf16a7a3d8127ec99782007af141946b4795001f876d54fb0d55978560"
+checksum = "345444e32442451b267fc254ae85a209c64be56d2890e601a0c37ff0c3c5ecd2"
 dependencies = [
- "atomic",
  "getrandom",
  "rand",
  "serde",
@@ -905,9 +896,9 @@ dependencies = [
 
 [[package]]
 name = "uuid-macro-internal"
-version = "1.6.1"
+version = "1.3.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "f49e7f3f3db8040a100710a11932239fd30697115e2ba4107080d8252939845e"
+checksum = "3f67b459f42af2e6e1ee213cb9da4dbd022d3320788c3fb3e1b893093f1e45da"
 dependencies = [
  "proc-macro2",
  "quote",

Cargo.toml

@@ -1,6 +1,6 @@
 [package]
 name = "plate-tool"
-version = "0.2.0"
+version = "0.1.0"
 edition = "2021"
 
 # See more keys and their definitions at https://doc.rust-lang.org/cargo/reference/manifest.html
@@ -10,20 +10,18 @@ yew = { version = "0.20.0", features = ["csr"] }
 yewdux = "0.9"
 wasm-bindgen = "0.2"
 web-sys = { version = "0.3", features = ["FormData", "HtmlFormElement",
- "HtmlDialogElement", "Blob", "Url", "Window",
+																				 "HtmlDialogElement", "Blob", "Url", "Window",
- "HtmlAnchorElement", "ReadableStream", "HtmlSelectElement", "HtmlOptionElement", "HtmlButtonElement",
+																				 "HtmlAnchorElement", "ReadableStream",
- "FileReader"] }
+																				 "FileReader"] }
 js-sys = "0.3"
 log = "0.4"
 wasm-logger = "0.2"
 regex = "1"
 lazy_static = "1.4"
-uuid = { version = "1.6", features = ["v7", "fast-rng", "macro-diagnostics", "js", "serde"] }
+uuid = { version = "1.3", features = ["v4", "fast-rng", "macro-diagnostics", "js", "serde"] }
 serde = { version = "1.0", features = ["derive"] }
 serde_json = "1.0"
 csv = "1.2"
-getrandom = { version = "0.2", features = ["js"] }
-rand = { version = "0.8", features = ["small_rng"] }
 
 [dev-dependencies]
 wasm-bindgen-test = "0.3.0"

README.md

@@ -53,37 +53,27 @@ To add a new plate, click the "New Plate" button:
  If you no longer need a transfer, select it as above and then click the "Delete" button.
  
  ### Importing and Exporting
-
+ 
- #### Export as CSV
  Exporting the transfers we have created to a CSV format is the primary (if not sole) usage of Plate Tool.
  To do so, first note the "File" tab at the top-left of the screen (above the list pane).
  Mouse over this tab, and a few more options will be revealed.
  We want to export: mouse over export and select "Export as CSV".
  You will be reminded that this is a one-way export (see JSON export/import below),
  and then prompted by your browser to select a location for your file.
-
+ 
- #### Export as JSON (Saving Your Work)
+ Currently, it is not possible to import from nor export to a format produced by other similar software.
- Currently, it is not possible to export to a format produced by other similar software.
  However, you might reasonably want to save a copy of your work
  either as a backup or to share.
  Mouse over the "File" tab, then "Export" as above, then alternatively select "Export as JSON". 
  Your browser will then prompt you to pick a suitable location to save your work as a file.
  (See note 1 below)
-
+ 
- #### Import from JSON (Recovering Your Work)
  If we want to import one such file, mouse over the "File" tab as before
- and select "Import", and finally click "Import from JSON".
+ and select "Import".
  This opens a modal where you are prompted to upload (see note 2)
  your file; it will then be processed and loaded.
  Keep in mind that this will overwrite any work you currently have open,
  so you may wish to export first (see above).
-
- #### Import Transfer from CSV (Using a picklist as a transfer)
- If you have a CSV generated by another tool (or plate-tool),
- you can import it as a single transfer.
- To do so, mouse over the "File" tab, then "Import", and finally "Import Transfer from CSV".
- When creating transfers via this method, the transfer cannot be edited.
- This is useful if you have a pre-existing picklist that you would like to visualize in plate-tool.
  
  _Note 1_: JSON files are plaintext!
  By default there is little whitespace (this makes comprehending them a challenge)

assets/js/screenshot_utility.js

@@ -1,25 +0,0 @@
-function copy_screenshot(el) {
-	html2canvas(el).then((canvas) => {
-		console.log("Copying image to clipboard");
-		canvas.toBlob((b) => {
-			try {
-				navigator.clipboard.write([
-					new ClipboardItem({
-						'image/png': b
-					})
-				]);
-			} catch (e) {
-				console.error("Failed to copy!");
-			}
-		});
-	});
-}
-
-function copy_screenshot_dest() {
-	let plate = document.getElementsByClassName("dest_plate")[0];
-	copy_screenshot(plate);
-}
-function copy_screenshot_src() {
-	let plate = document.getElementsByClassName("source_plate")[0];
-	copy_screenshot(plate);
-}

assets/scss/default_theme/components/_upper_menu.scss

@@ -12,8 +12,6 @@ div.upper_menu {
 
 	visibility: inherit;
 
-	display: flex;
-
 	div.dropdown {
 		margin-right: 2px;
 

index.html

@@ -4,8 +4,6 @@
         <meta charset="utf-8" />
         <link data-trunk rel="scss" href="assets/scss/index.scss">
         <link data-trunk rel="copy-dir" href="assets/fonts">
-        <script data-trunk src="assets/js/screenshot_utility.js"></script>
-        <script data-trunk src="assets/js/html2canvas.js"></script>
         <title>Plate Tool</title>
     </head>
 </html>

src/components/main_window.rs

@@ -1,27 +1,18 @@
 #![allow(non_snake_case)]
-use std::collections::HashSet;
-
 use js_sys::Array;
-use lazy_static::lazy_static;
-use regex::Regex;
 use wasm_bindgen::{prelude::*, JsCast, JsValue};
-use web_sys::{
+use web_sys::{Blob, HtmlAnchorElement, HtmlDialogElement, HtmlFormElement, HtmlInputElement, Url};
-    Blob, HtmlAnchorElement, HtmlButtonElement, HtmlDialogElement, HtmlFormElement,
-    HtmlInputElement, HtmlOptionElement, HtmlSelectElement, Url,
-};
 use yew::prelude::*;
 use yewdux::prelude::*;
 
 use super::new_plate_dialog::NewPlateDialog;
 use super::plates::plate_container::PlateContainer;
 use super::states::{CurrentTransfer, MainState};
-use super::transfer_menu::{letters_to_num, RegionDisplay, TransferMenu};
+use super::transfer_menu::TransferMenu;
 use super::tree::Tree;
 
 use crate::data::csv::state_to_csv;
 use crate::data::plate_instances::PlateInstance;
-use crate::data::transfer::Transfer;
-use crate::data::transfer_region::{Region, TransferRegion};
 
 #[function_component]
 pub fn MainWindow() -> Html {
@@ -49,15 +40,6 @@ pub fn MainWindow() -> Html {
         });
     }
 
-    let toggle_in_transfer_hashes_callback = {
-        let main_dispatch = main_dispatch.clone();
-        Callback::from(move |_| {
-            main_dispatch.reduce_mut(|state| {
-                state.preferences.in_transfer_hashes ^= true;
-            })
-        })
-    };
-
     let new_plate_dialog_is_open = use_state_eq(|| false);
     let new_plate_dialog_callback = {
         let new_plate_dialog_is_open = new_plate_dialog_is_open.clone();
@@ -118,7 +100,6 @@ pub fn MainWindow() -> Html {
     };
 
     let import_json_button_callback = {
-        let main_dispatch = main_dispatch.clone();
         Callback::from(move |_| {
             let window = web_sys::window().unwrap();
             let document = window.document().unwrap();
@@ -196,274 +177,6 @@ pub fn MainWindow() -> Html {
         })
     };
 
-    let import_transfer_csv_callback = {
-        Callback::from(move |_| {
-            let window = web_sys::window().unwrap();
-            let document = window.document().unwrap();
-            let body = document.body().unwrap();
-            let modal = document
-                .create_element("dialog")
-                .unwrap()
-                .dyn_into::<HtmlDialogElement>()
-                .unwrap();
-            modal.set_text_content(Some("Import File:"));
-            let onclose_callback = {
-                let modal = modal.clone();
-                Closure::<dyn FnMut(_)>::new(move |_: Event| {
-                    modal.remove();
-                })
-            };
-            modal.set_onclose(Some(onclose_callback.as_ref().unchecked_ref()));
-            onclose_callback.forget();
-
-            let form = document
-                .create_element("form")
-                .unwrap()
-                .dyn_into::<HtmlFormElement>()
-                .unwrap();
-            let input = document
-                .create_element("input")
-                .unwrap()
-                .dyn_into::<HtmlInputElement>()
-                .unwrap();
-            input.set_type("file");
-            input.set_accept(".csv");
-            form.append_child(&input).unwrap();
-
-            let input_callback = {
-                let main_dispatch = main_dispatch.clone();
-                let modal = modal.clone();
-                Closure::<dyn FnMut(_)>::new(move |e: Event| {
-                    if let Some(input) = e.current_target() {
-                        let input = input
-                            .dyn_into::<HtmlInputElement>()
-                            .expect("We know this is an input.");
-                        if let Some(files) = input.files() {
-                            if let Some(file) = files.get(0) {
-                                let fr = web_sys::FileReader::new().unwrap();
-                                fr.read_as_text(&file).unwrap();
-                                let fr1 = fr.clone(); // Clone to avoid outliving closure
-                                let main_dispatch = main_dispatch.clone(); // Clone to satisfy FnMut
-                                                                           // trait
-                                let modal = modal.clone();
-                                let onload = Closure::<dyn FnMut(_)>::new(move |_: Event| {
-                                    if let Some(value) =
-                                        &fr1.result().ok().and_then(|v| v.as_string())
-                                    {
-                                        let mut rdr = csv::Reader::from_reader(value.as_bytes());
-                                        let mut records = Vec::new();
-                                        for record in
-                                            rdr.deserialize::<crate::data::csv::TransferRecord>()
-                                        {
-                                            match record {
-                                                Ok(r) => {
-                                                    //log::debug!("{:?}", r);
-                                                    records.push(r);
-                                                }
-                                                Err(e) => {
-                                                    log::debug!("{:?}", e);
-                                                }
-                                            }
-                                        }
-
-                                        let mut sources: HashSet<String> = HashSet::new();
-                                        let mut destinations: HashSet<String> = HashSet::new();
-                                        for record in records.iter() {
-                                            sources.insert(record.source_plate.clone());
-                                            destinations.insert(record.destination_plate.clone());
-                                        }
-
-                                        let window = web_sys::window().unwrap();
-                                        let document = window.document().unwrap();
-                                        let form = document
-                                            .create_element("form")
-                                            .unwrap()
-                                            .dyn_into::<HtmlFormElement>()
-                                            .unwrap();
-                                        let from_source = document
-                                            .create_element("select")
-                                            .unwrap()
-                                            .dyn_into::<HtmlSelectElement>()
-                                            .unwrap();
-                                        for source in sources {
-                                            let option = document
-                                                .create_element("option")
-                                                .unwrap()
-                                                .dyn_into::<HtmlOptionElement>()
-                                                .unwrap();
-                                            option.set_value(&source);
-                                            option.set_text(&source);
-                                            from_source.append_child(&option).unwrap();
-                                        }
-                                        let to_source = document
-                                            .create_element("select")
-                                            .unwrap()
-                                            .dyn_into::<HtmlSelectElement>()
-                                            .unwrap();
-                                        for source in &main_dispatch.get().source_plates {
-                                            let option = document
-                                                .create_element("option")
-                                                .unwrap()
-                                                .dyn_into::<HtmlOptionElement>()
-                                                .unwrap();
-                                            option.set_value(&source.name);
-                                            option.set_text(&source.name);
-                                            to_source.append_child(&option).unwrap();
-                                        }
-                                        let from_dest = document
-                                            .create_element("select")
-                                            .unwrap()
-                                            .dyn_into::<HtmlSelectElement>()
-                                            .unwrap();
-                                        for dest in destinations {
-                                            let option = document
-                                                .create_element("option")
-                                                .unwrap()
-                                                .dyn_into::<HtmlOptionElement>()
-                                                .unwrap();
-                                            option.set_value(&dest);
-                                            option.set_text(&dest);
-                                            from_dest.append_child(&option).unwrap();
-                                        }
-                                        let to_dest = document
-                                            .create_element("select")
-                                            .unwrap()
-                                            .dyn_into::<HtmlSelectElement>()
-                                            .unwrap();
-                                        for dest in &main_dispatch.get().destination_plates {
-                                            let option = document
-                                                .create_element("option")
-                                                .unwrap()
-                                                .dyn_into::<HtmlOptionElement>()
-                                                .unwrap();
-                                            option.set_value(&dest.name);
-                                            option.set_text(&dest.name);
-                                            to_dest.append_child(&option).unwrap();
-                                        }
-                                        let submit = document
-                                            .create_element("button")
-                                            .unwrap()
-                                            .dyn_into::<HtmlButtonElement>()
-                                            .unwrap();
-                                        submit.set_value("Submit");
-                                        submit.set_inner_text("Submit");
-                                        let submit_callback = {
-                                            let main_dispatch = main_dispatch.clone();
-                                            let from_source = from_source.clone();
-                                            let to_source = to_source.clone();
-                                            let from_dest = from_dest.clone();
-                                            let to_dest = to_dest.clone();
-                                            Closure::<dyn FnMut(_)>::new(move |_: Event| {
-                                                let from_source = from_source.value();
-                                                let to_source = to_source.value();
-                                                let from_dest = from_dest.value();
-                                                let to_dest = to_dest.value();
-
-                                                lazy_static! {
-                                                    static ref REGEX: Regex =
-                                                        Regex::new(r"([A-Z]+)(\d+)").unwrap();
-                                                }
-                                                let records: Vec<((u8, u8), (u8, u8))> = records
-                                                    .iter()
-                                                    .filter(|record| {
-                                                        record.source_plate == from_source
-                                                    })
-                                                    .filter(|record| {
-                                                        record.destination_plate == from_dest
-                                                    })
-                                                    .map(|record| {
-                                                        let c1 = REGEX
-                                                            .captures(&record.source_well)
-                                                            .unwrap();
-                                                        let c2 = REGEX
-                                                            .captures(&record.destination_well)
-                                                            .unwrap();
-                                                        log::debug!("{} {}", &record.source_well, &record.destination_well);
-                                                        log::debug!("{},{}  {},{}", &c1[1], &c1[2], &c2[1], &c2[2]);
-
-                                                        (
-                                                            (
-                                                                letters_to_num(&c1[1]).unwrap(),
-                                                                c1[2].parse::<u8>().unwrap(),
-                                                            ),
-                                                            (
-                                                                letters_to_num(&c2[1]).unwrap(),
-                                                                c2[2].parse::<u8>().unwrap(),
-                                                            ),
-                                                        )
-                                                    })
-                                                    .collect();
-
-                                                let spi = main_dispatch
-                                                    .get()
-                                                    .source_plates
-                                                    .iter()
-                                                    .find(|src| src.name == to_source)
-                                                    .unwrap()
-                                                    .clone();
-                                                let dpi = main_dispatch
-                                                    .get()
-                                                    .destination_plates
-                                                    .iter()
-                                                    .find(|dest| dest.name == to_dest)
-                                                    .unwrap()
-                                                    .clone();
-
-                                                let custom_region = Region::new_custom(&records);
-                                                let transfer_region = TransferRegion {
-                                                    source_region: custom_region.clone(),
-                                                    dest_region: custom_region,
-                                                    interleave_source: (1, 1),
-                                                    interleave_dest: (1, 1),
-                                                    source_plate: spi.plate,
-                                                    dest_plate: dpi.plate,
-                                                };
-
-                                                let transfer = Transfer::new(
-                                                    spi,
-                                                    dpi,
-                                                    transfer_region,
-                                                    "Custom Transfer".to_string(),
-                                                );
-                                                main_dispatch.reduce_mut(|state| {
-                                                    state.transfers.push(transfer);
-                                                    state.selected_transfer = state
-                                .transfers
-                                .last()
-                                .expect("An element should have just been added")
-                                .get_uuid();
-                                                });
-                                            })
-                                        };
-                                        submit.set_onclick(Some(
-                                            submit_callback.as_ref().unchecked_ref(),
-                                        ));
-                                        submit_callback.forget();
-
-                                        form.append_child(&from_source).unwrap();
-                                        form.append_child(&to_source).unwrap();
-                                        form.append_child(&from_dest).unwrap();
-                                        form.append_child(&to_dest).unwrap();
-                                        modal.append_child(&submit).unwrap();
-                                        modal.append_child(&form).unwrap();
-                                    }
-                                });
-                                fr.set_onload(Some(onload.as_ref().unchecked_ref()));
-                                onload.forget(); // Magic (don't touch)
-                            }
-                        }
-                    }
-                })
-            };
-            input.set_onchange(Some(input_callback.as_ref().unchecked_ref()));
-            input_callback.forget(); // Magic straight from the docs, don't touch :(
-
-            modal.append_child(&form).unwrap();
-            body.append_child(&modal).unwrap();
-            modal.show_modal().unwrap();
-        })
-    };
-
     html! {
         <>
         <div class="upper_menu">
@@ -477,22 +190,7 @@ pub fn MainWindow() -> Html {
                         <button onclick={export_json_button_callback}>{"Export as JSON"}</button>
                     </div>
                 </div>
-                <div class="dropdown-sub">
+                <button onclick={import_json_button_callback}>{"Import"}</button>
-                    <button>{"Import"}</button>
-                    <div>
-                        <button onclick={import_json_button_callback}>{"Import from JSON"}</button>
-                        <button onclick={import_transfer_csv_callback}>{"Import Transfer from CSV"}</button>
-                    </div>
-                </div>
-            </div>
-            <div class="dropdown">
-                <button>{"Options"}</button>
-                <div class="dropdown-sub">
-                    <button>{"Styles"}</button>
-                    <div>
-                    <button onclick={toggle_in_transfer_hashes_callback}>{"Toggle transfer hashes"}</button>
-                    </div>
-                </div>
             </div>
         </div>
         <div class="main_container">

src/components/new_plate_dialog.rs

@@ -99,8 +99,8 @@ pub fn NewPlateDialog(props: &NewPlateDialogProps) -> Html {
                 <option value="12">{"12"}</option>
                 <option value="24">{"24"}</option>
                 <option value="48">{"48"}</option>
-                <option value="96" selected={true}>{"96"}</option>
+                <option value="96">{"96"}</option>
-                <option value="384">{"384"}</option>
+                <option value="384" selected={true}>{"384"}</option>
                 <option value="1536">{"1536"}</option>
                 <option value="3456">{"3456"}</option>
             </select>

src/components/plates/destination_plate.rs

@@ -34,21 +34,12 @@ pub fn DestinationPlate(props: &DestinationPlateProps) -> Html {
         let (pt1, pt2) = match ct_state.transfer.transfer_region.dest_region {
             Region::Point((x, y)) => ((x, y), (x, y)),
             Region::Rect(c1, c2) => (c1, c2),
-            Region::Custom(_) => ((0,0), (0,0)),
         };
         m_start_handle.set(Some(pt1));
         m_end_handle.set(Some(pt2));
     }
     let destination_wells = ct_state.transfer.transfer_region.get_destination_wells();
 
-    let ordered_ids: Vec<uuid::Uuid> = {
-        let mut ids: Vec<uuid::Uuid> = main_state.transfers.clone().iter()
-        .map(|x| x.id)
-        .collect();
-        ids.sort_unstable();
-        ids
-    };
-
     let mouse_callback = {
         let m_start_handle = m_start_handle.clone();
         let m_end_handle = m_end_handle.clone();
@@ -107,11 +98,6 @@ pub fn DestinationPlate(props: &DestinationPlateProps) -> Html {
 
     let mouseleave_callback = Callback::clone(&mouseup_callback);
 
-
-    let screenshot_callback = Callback::from(|_| {
-        let _ = js_sys::eval("copy_screenshot_dest()");
-    });
-
     let column_header = {
         let headers = (1..=props.destination_plate.plate.size().1)
             .map(|j| {
@@ -128,10 +114,10 @@ pub fn DestinationPlate(props: &DestinationPlateProps) -> Html {
                 <DestPlateCell i={i} j={j}
                 selected={super::source_plate::in_rect(*m_start_handle.clone(), *m_end_handle.clone(), (i,j))}
                 mouse={mouse_callback.clone()}
-                in_transfer={destination_wells.contains(&(i,j)) && main_state.preferences.in_transfer_hashes}
+                in_transfer={destination_wells.contains(&(i,j))}
                 color={transfer_map.get(&(i,j))
                     .and_then(|t| t.last())
-                    .map(|t| PALETTE.get_ordered(t.get_uuid(), &ordered_ids))
+                    .map(|t| PALETTE.get_uuid(t.get_uuid()))
                 }
                 cell_height={props.cell_height}
                 title={transfer_map.get(&(i,j)).map(|transfers| format!("Used by: {}", transfers.iter().map(|t| t.name.clone())
@@ -148,8 +134,7 @@ pub fn DestinationPlate(props: &DestinationPlateProps) -> Html {
         .collect::<Html>();
 
     html! {
-        <div ondblclick={screenshot_callback}
+        <div class={classes!{"dest_plate",
-        class={classes!{"dest_plate",
             "W".to_owned()+&props.source_plate.plate.plate_format.to_string()}}>
             <table
             onmouseup={move |e| {

src/components/plates/source_plate.rs

@@ -34,7 +34,6 @@ pub fn SourcePlate(props: &SourcePlateProps) -> Html {
         let (pt1, pt2) = match ct_state.transfer.transfer_region.source_region {
             Region::Point((x, y)) => ((x, y), (x, y)),
             Region::Rect(c1, c2) => (c1, c2),
-            Region::Custom(_) => ((0,0), (0,0)),
         };
         m_start_handle.set(Some(pt1));
         m_end_handle.set(Some(pt2));
@@ -61,14 +60,6 @@ pub fn SourcePlate(props: &SourcePlateProps) -> Html {
 
     let source_wells = ct_state.transfer.transfer_region.get_source_wells();
 
-    let ordered_ids: Vec<uuid::Uuid> = {
-        let mut ids: Vec<uuid::Uuid> = main_state.transfers.clone().iter()
-        .map(|x| x.id)
-        .collect();
-        ids.sort_unstable();
-        ids
-    };
-
     let mouse_callback = {
         let m_start_handle = m_start_handle.clone();
         let m_end_handle = m_end_handle.clone();
@@ -108,10 +99,6 @@ pub fn SourcePlate(props: &SourcePlateProps) -> Html {
 
     let mouseleave_callback = Callback::clone(&mouseup_callback);
 
-    let screenshot_callback = Callback::from(|_| {
-        let _ = js_sys::eval("copy_screenshot_src()");
-    });
-
     let column_header = {
         let headers = (1..=props.source_plate.plate.size().1)
             .map(|j| {
@@ -131,10 +118,10 @@ pub fn SourcePlate(props: &SourcePlateProps) -> Html {
                         <SourcePlateCell i={i} j={j}
                         selected={in_rect(*m_start_handle.clone(), *m_end_handle.clone(), (i,j))}
                         mouse={mouse_callback.clone()}
-                        in_transfer={source_wells.contains(&(i,j)) && main_state.preferences.in_transfer_hashes}
+                        in_transfer={source_wells.contains(&(i,j))}
                         color={transfer_map.get(&(i,j))
                             .and_then(|t| t.last())
-                            .map(|t| PALETTE.get_ordered(t.get_uuid(), &ordered_ids))
+                            .map(|t| PALETTE.get_uuid(t.get_uuid()))
                         }
                         cell_height={props.cell_height}
                         title={transfer_map.get(&(i,j)).map(|transfers| format!("Used by: {}", transfers.iter().map(|t| t.name.clone())
@@ -152,8 +139,7 @@ pub fn SourcePlate(props: &SourcePlateProps) -> Html {
         .collect::<Html>();
 
     html! {
-        <div ondblclick={screenshot_callback}
+        <div class={classes!{"source_plate",
-        class={classes!{"source_plate",
         "W".to_owned()+&props.source_plate.plate.plate_format.to_string()}}>
             <table
             onmouseup={move |e| {

src/components/plates/util.rs

@@ -2,10 +2,6 @@
 // https://iquilezles.org/articles/palettes/
 // http://dev.thi.ng/gradients/
 
-use rand::prelude::*;
-use rand::rngs::SmallRng;
-use lazy_static::lazy_static;
-
 #[derive(Clone, Copy, PartialEq, Debug)]
 pub struct ColorPalette {
     a: [f64; 3],
@@ -35,23 +31,9 @@ impl ColorPalette {
         self.get((2f64.powi(-(t.ilog2() as i32))) * (t as f64 + 0.5f64) - 1.0f64)
     }
 
-    // pub fn get_uuid(&self, t: uuid::Uuid) -> [f64; 3] {
+    pub fn get_uuid(&self, t: uuid::Uuid) -> [f64; 3] {
-    //     // self.get(t.as_u128() as f64 / (u128::MAX) as f64)
+        log::debug!("{}", t.as_u128() as f64 / (u128::MAX) as f64);
-    //     let mut r = SmallRng::seed_from_u64(t.as_u128() as u64);
+        self.get(t.as_u128() as f64 / (u128::MAX) as f64)
-    //     self.get(r.gen_range(0.0..1.0f64))
-    // }
-
-    pub fn get_ordered(&self, t: uuid::Uuid, ordered_uuids: &Vec<uuid::Uuid>)
-        -> [f64; 3] {
-        let index = ordered_uuids.iter().position(|&x| x == t).expect("uuid must be in list of uuids") + 1;
-        return self.get(Self::space_evenly(index))
-    }
-
-    fn space_evenly(x: usize) -> f64 {
-        let e: usize = (x.ilog2() + 1) as usize;
-        let d: usize = (2usize.pow(e as u32)) as usize;
-        let n: usize = (2*x + 1) % d;
-        return (n as f64) / (d as f64);
     }
 }
 
@@ -72,5 +54,4 @@ impl Palettes {
         c: [0.100, 0.500, 0.360],
         d: [0.000, 0.000, 0.650],
     };
-
 }

src/components/states.rs

@@ -13,17 +13,6 @@ pub struct CurrentTransfer {
     pub transfer: Transfer,
 }
 
-#[derive(PartialEq, Clone, Copy, Serialize, Deserialize)]
-pub struct Preferences {
-    pub in_transfer_hashes: bool,
-}
-
-impl Default for Preferences {
-    fn default() -> Self {
-        Self { in_transfer_hashes: true }
-    }
-}
-
 #[derive(Default, PartialEq, Clone, Serialize, Deserialize)]
 #[non_exhaustive]
 pub struct MainState {
@@ -33,9 +22,6 @@ pub struct MainState {
     pub selected_source_plate: Uuid,
     pub selected_dest_plate: Uuid,
     pub selected_transfer: Uuid,
-
-    #[serde(default)]
-    pub preferences: Preferences,
 }
 
 impl Store for MainState {

src/components/transfer_menu.rs

@@ -39,9 +39,6 @@ pub fn TransferMenu() -> Html {
         let ct_dispatch = ct_dispatch.clone();
 
         Callback::from(move |e: Event| {
-            if matches!(ct_dispatch.get().transfer.transfer_region.source_region, Region::Custom(_)) {
-                return; // Do nothing here!
-            }
             let target: Option<EventTarget> = e.target();
             let input = target.and_then(|t| t.dyn_into::<HtmlInputElement>().ok());
             if let Some(input) = input {
@@ -195,7 +192,7 @@ pub fn TransferMenu() -> Html {
                         let new_transfer = Transfer::new(
                             spi.clone(),
                             dpi.clone(),
-                            ct_state.transfer.transfer_region.clone(),
+                            ct_state.transfer.transfer_region,
                             ct_state.transfer.name.clone(),
                         );
                         main_dispatch.reduce_mut(|state| {
@@ -253,8 +250,6 @@ pub fn TransferMenu() -> Html {
                 onchange={on_name_change}
                 value={ct_state.transfer.name.clone()}/>
             </div>
-            // Anything below here is not rendered when a Custom transfer is selected
-            if !matches!(&ct_state.transfer.transfer_region.source_region, Region::Custom(_)) {
             <div>
                 <label for="src_region"><h3>{"Source Region:"}</h3></label>
                 <input type="text" name="src_region"
@@ -296,7 +291,6 @@ pub fn TransferMenu() -> Html {
             onchange={on_volume_change}
             value={ct_state.transfer.volume.to_string()}/>
             </div>
-            }
             <div id="controls">
             <input type="button" name="new_transfer" onclick={new_transfer_button_callback}
             value={"New"} />
@@ -350,37 +344,6 @@ impl TryFrom<String> for RegionDisplay {
         }
     }
 }
-impl TryFrom<&str> for RegionDisplay {
-    type Error = &'static str;
-
-    fn try_from(value: &str) -> Result<Self, Self::Error> {
-        lazy_static! {
-            static ref REGION_REGEX: Regex = Regex::new(r"([A-Z]+)(\d+):([A-Z]+)(\d+)").unwrap();
-        }
-        if let Some(captures) = REGION_REGEX.captures(&value) {
-            if captures.len() != 5 {
-                return Err("Not enough capture groups");
-            }
-            let col_start = letters_to_num(&captures[1]).ok_or("Column start failed to parse")?;
-            let col_end = letters_to_num(&captures[3]).ok_or("Column end failed to parse")?;
-            let row_start: u8 = captures[2]
-                .parse::<u8>()
-                .or(Err("Row start failed to parse"))?;
-            let row_end: u8 = captures[4]
-                .parse::<u8>()
-                .or(Err("Row end failed to parse"))?;
-            Ok(RegionDisplay {
-                text: value.to_string(),
-                col_start,
-                row_start,
-                col_end,
-                row_end,
-            })
-        } else {
-            Err("Regex match failed")
-        }
-    }
-}
 impl From<&Region> for RegionDisplay {
     fn from(value: &Region) -> Self {
         match *value {
@@ -390,7 +353,6 @@ impl From<&Region> for RegionDisplay {
             Region::Rect(c1, c2) => RegionDisplay::try_from((c1.0, c1.1, c2.0, c2.1))
                 .ok()
                 .unwrap(),
-            Region::Custom(_) => RegionDisplay { text: "CUSTOM".to_string(), col_start: 0, row_start: 0, col_end: 0, row_end: 0 }
         }
     }
 }
@@ -423,10 +385,9 @@ impl TryFrom<(u8, u8, u8, u8)> for RegionDisplay {
         })
     }
 }
-pub fn letters_to_num(letters: &str) -> Option<u8> {
+fn letters_to_num(letters: &str) -> Option<u8> {
     let mut num: u8 = 0;
-    for (i, letter) in letters.to_ascii_uppercase().chars().rev().enumerate() {
+    for (i, letter) in letters.chars().rev().enumerate() {
-        log::debug!("{}, {}", i, letter);
         let n = letter as u8;
         if !(65..=90).contains(&n) {
             return None;

src/data/csv.rs

@@ -2,23 +2,23 @@ use crate::components::states::MainState;
 use crate::components::transfer_menu::num_to_letters;
 use crate::data::transfer::Transfer;
 
-use serde::{Serialize, Deserialize};
+use serde::Serialize;
 use std::error::Error;
 
-#[derive(Serialize, Deserialize, Debug)]
+#[derive(Serialize, Debug)]
-pub struct TransferRecord {
+struct TransferRecord {
-    #[serde(rename = "Source Plate")]
+    #[serde(rename = "Source Plate Barcode")]
-    pub source_plate: String,
+    source_plate: String,
     #[serde(rename = "Source Well")]
-    pub source_well: String,
+    source_well: String,
-    #[serde(rename = "Dest Plate")]
+    #[serde(rename = "Destination Plate Barcode")]
-    pub destination_plate: String,
+    destination_plate: String,
     #[serde(rename = "Destination Well")]
-    pub destination_well: String,
+    destination_well: String,
-    #[serde(rename = "Transfer Volume")]
+    #[serde(rename = "Volume")]
-    pub volume: f32,
+    volume: f32,
     #[serde(rename = "Concentration")]
-    pub concentration: Option<f32>,
+    concentration: Option<f32>,
 }
 
 pub fn state_to_csv(state: &MainState) -> Result<String, Box<dyn Error>> {

src/data/plate_instances.rs

@@ -5,8 +5,6 @@ use uuid::Uuid;
 #[derive(PartialEq, Clone, Serialize, Deserialize)]
 pub struct PlateInstance {
     pub plate: Plate,
-    #[serde(rename = "id_v7")]
-    #[serde(default = "Uuid::now_v7")]
     id: Uuid,
     pub name: String,
 }
@@ -18,7 +16,7 @@ impl PlateInstance {
                 plate_type: sort,
                 plate_format: format,
             },
-            id: Uuid::now_v7(),
+            id: Uuid::new_v4(),
             name,
         }
     }
@@ -36,7 +34,7 @@ impl From<Plate> for PlateInstance {
     fn from(value: Plate) -> Self {
         PlateInstance {
             plate: value,
-            id: Uuid::now_v7(),
+            id: Uuid::new_v4(),
             name: "New Plate".to_string(),
         }
     }

src/data/transfer.rs

@@ -10,9 +10,7 @@ pub struct Transfer {
     pub source_id: Uuid,
     pub dest_id: Uuid,
     pub name: String,
-    #[serde(rename = "id_v7")]
+    id: Uuid,
-    #[serde(default = "Uuid::now_v7")]
-    pub id: Uuid,
     pub transfer_region: TransferRegion,
     #[serde(default = "default_volume")]
     pub volume: f32,
@@ -46,7 +44,7 @@ impl Transfer {
             source_id: source.get_uuid(),
             dest_id: dest.get_uuid(),
             name,
-            id: Uuid::now_v7(),
+            id: Uuid::new_v4(),
             transfer_region: tr,
             volume: 2.5,
         }

src/data/transfer_region.rs

@@ -1,20 +1,11 @@
 use serde::{Deserialize, Serialize};
 
-use crate::components::transfer_menu::RegionDisplay;
-
 use super::plate::Plate;
 
-#[derive(Clone, PartialEq, Eq, Serialize, Deserialize, Debug)]
+#[derive(Clone, Copy, PartialEq, Eq, Serialize, Deserialize, Debug)]
-pub struct CustomRegion {
-    src: Vec<(u8, u8)>,
-    dest: Vec<(u8, u8)>,
-}
-
-#[derive(Clone, PartialEq, Eq, Serialize, Deserialize, Debug)]
 pub enum Region {
     Rect((u8, u8), (u8, u8)),
     Point((u8, u8)),
-    Custom(CustomRegion),
 }
 impl Default for Region {
     fn default() -> Self {
@@ -32,24 +23,8 @@ impl TryFrom<Region> for ((u8, u8), (u8, u8)) {
         }
     }
 }
-impl Region {
-    pub fn new_custom(transfers: &Vec<((u8, u8), (u8, u8))>) -> Self {
-        let mut src_pts: Vec<(u8, u8)> = Vec::with_capacity(transfers.len());
-        let mut dest_pts: Vec<(u8, u8)> = Vec::with_capacity(transfers.len());
 
-        for transfer in transfers {
+#[derive(PartialEq, Eq, Clone, Copy, Serialize, Deserialize, Debug)]
-            src_pts.push(transfer.0);
-            dest_pts.push(transfer.1);
-        }
-
-        Region::Custom(CustomRegion {
-            src: src_pts,
-            dest: dest_pts,
-        })
-    }
-}
-
-#[derive(PartialEq, Eq, Clone, Serialize, Deserialize, Debug)]
 pub struct TransferRegion {
     pub source_plate: Plate,
     pub source_region: Region, // Even if it is just a point, we don't want corners.
@@ -74,7 +49,7 @@ impl Default for TransferRegion {
 
 impl TransferRegion {
     pub fn get_source_wells(&self) -> Vec<(u8, u8)> {
-        match &self.source_region {
+        match self.source_region {
             Region::Rect(c1, c2) => {
                 let mut wells = Vec::<(u8, u8)>::new();
                 let (ul, br) = standardize_rectangle(&c1, &c2);
@@ -96,8 +71,7 @@ impl TransferRegion {
                 }
                 wells
             }
-            Region::Point(p) => vec![*p],
+            Region::Point(p) => vec![p],
-            Region::Custom(c) => c.src.clone(),
         }
     }
 
@@ -138,7 +112,6 @@ impl TransferRegion {
         let source_corners: ((u8, u8), (u8, u8)) = match self.source_region {
             Region::Point((x, y)) => ((x, y), (x, y)),
             Region::Rect(c1, c2) => (c1, c2),
-            Region::Custom(_) => ((0, 0), (0, 0)),
         };
         let (source_ul, _) = standardize_rectangle(&source_corners.0, &source_corners.1);
         // This map is not necessarily injective or surjective,
@@ -147,7 +120,7 @@ impl TransferRegion {
         // and simple then we *will* have injectivity.
 
         // Non-replicate transfers:
-        match &self.dest_region {
+        match self.dest_region {
             Region::Point((x, y)) => {
                 Box::new(move |(i, j)| {
                     if source_wells.contains(&(i, j)) {
@@ -251,22 +224,6 @@ impl TransferRegion {
                     }
                 })
             }
-            Region::Custom(c) => Box::new(move |(i, j)| {
-                let src = c.src.clone();
-                let dest = c.dest.clone();
-
-                let points: Vec<(u8, u8)> = src
-                    .iter()
-                    .enumerate()
-                    .filter(|(_index, (x, y))| *x == i && *y == j)
-                    .map(|(index, _)| dest[index])
-                    .collect();
-                if points.is_empty() {
-                    None
-                } else {
-                    Some(points)
-                }
-            }),
         }
     }
 
@@ -300,7 +257,6 @@ impl TransferRegion {
                     return Err("Source region is out-of-bounds! (Too wide)");
                 }
             }
-            Region::Custom(_) => return Ok(()),
         }
 
         if il_source.0 == 0 || il_dest.1 == 0 {